HL_7OF1_064

3D structure

PDB id

7OF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population A from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUGUUG

Length

7 nucleotides

Bulged bases

7OF1|1|1|U|3354, 7OF1|1|1|U|3355

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OF1_064 not in the Motif Atlas

Geometric match to HL_5TBW_012

Geometric discrepancy: 0.3918

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

7OF1|1|1|C|3349
7OF1|1|1|C|3350
7OF1|1|1|U|3352
7OF1|1|1|G|3353
7OF1|1|1|U|3354
7OF1|1|1|U|3355
7OF1|1|1|G|3356

Current chains

Chain 1

25S rRNA

Nearby chains

Chain U

60S ribosomal protein L22-A