HL_7OF1_067

3D structure

PDB id

7OF1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population A from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CACAUUG

Length

7 nucleotides

Bulged bases

7OF1|1|2|A|111, 7OF1|1|2|U|113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OF1_067 not in the Motif Atlas

Homologous match to HL_5TBW_075

Geometric discrepancy: 0.1964

The information below is about HL_5TBW_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22523.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

7OF1|1|2|C|108
7OF1|1|2|A|109
7OF1|1|2|C|110
7OF1|1|2|A|111
7OF1|1|2|U|112
7OF1|1|2|U|113
7OF1|1|2|G|114

Current chains

Chain 2

5.8S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain X

60S ribosomal protein L25

Chain j

60S ribosomal protein L37-A

Chain l

60S ribosomal protein L39