HL_7OF2_012

3D structure

PDB id

7OF2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with GTPBP6.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAACAGC

Length

8 nucleotides

Bulged bases

7OF2|1|A|A|2110, 7OF2|1|A|G|2113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OF2_012 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.1096

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

7OF2|1|A|G|2107
7OF2|1|A|G|2108
7OF2|1|A|A|2109
7OF2|1|A|A|2110
7OF2|1|A|C|2111
7OF2|1|A|A|2112
7OF2|1|A|G|2113
7OF2|1|A|C|2114

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain I

39S ribosomal protein L10, mitochondrial

Chain N

39S ribosomal protein L16, mitochondrial

Chain o

Ribosomal protein 63, mitochondrial