HL_7OF3_005

3D structure

PDB id

7OF3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUCUGCAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OF3_005 not in the Motif Atlas

Geometric match to HL_5L4O_002

Geometric discrepancy: 0.2794

The information below is about HL_5L4O_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

7OF3|1|A|U|1847
7OF3|1|A|U|1848
7OF3|1|A|C|1849
7OF3|1|A|U|1850
7OF3|1|A|G|1851
7OF3|1|A|C|1852
7OF3|1|A|A|1855
7OF3|1|A|A|1856

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 0

39S ribosomal protein L32, mitochondrial

Chain M

39S ribosomal protein L15, mitochondrial

Chain S

39S ribosomal protein L21, mitochondrial