HL_7OF3_009

3D structure

PDB id

7OF3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCGACAAAC

Length

9 nucleotides

Bulged bases

7OF3|1|A|A|1991, 7OF3|1|A|A|1994

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OF3_009 not in the Motif Atlas

Geometric match to HL_5TBW_021

Geometric discrepancy: 0.2564

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7OF3|1|A|G|1988
7OF3|1|A|C|1989
7OF3|1|A|G|1990
7OF3|1|A|A|1991
7OF3|1|A|C|1992
7OF3|1|A|A|1993
7OF3|1|A|A|1994
7OF3|1|A|A|1995
7OF3|1|A|C|1996

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 2

39S ribosomal protein L34, mitochondrial

Chain D

39S ribosomal protein L2, mitochondrial