HL_7OF3_026

3D structure

PDB id

7OF3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 (dataset2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGGGGCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OF3_026 not in the Motif Atlas

Geometric match to HL_4KQY_001

Geometric discrepancy: 0.2645

The information below is about HL_4KQY_001

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7OF3|1|A|U|2813
7OF3|1|A|G|2814
7OF3|1|A|G|2815
7OF3|1|A|G|2816
7OF3|1|A|G|2817
7OF3|1|A|C|2818
7OF3|1|A|G|2819

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain C

5-methylcytosine rRNA methyltransferase NSUN4