HL_7OF4_012

3D structure

PDB id

7OF4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAACAGC

Length

8 nucleotides

Bulged bases

7OF4|1|A|A|2110, 7OF4|1|A|G|2113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OF4_012 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.1064

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

7OF4|1|A|G|2107
7OF4|1|A|G|2108
7OF4|1|A|A|2109
7OF4|1|A|A|2110
7OF4|1|A|C|2111
7OF4|1|A|A|2112
7OF4|1|A|G|2113
7OF4|1|A|C|2114

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain I

39S ribosomal protein L10, mitochondrial

Chain N

39S ribosomal protein L16, mitochondrial

Chain o

Ribosomal protein 63, mitochondrial