HL_7OF4_014

3D structure

PDB id

7OF4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCUAAAAGCAG

Length

11 nucleotides

Bulged bases

7OF4|1|A|A|2181

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OF4_014 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.1828

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7OF4|1|A|C|2175
7OF4|1|A|C|2176
7OF4|1|A|U|2177
7OF4|1|A|A|2178
7OF4|1|A|A|2179
7OF4|1|A|A|2180
7OF4|1|A|A|2181
7OF4|1|A|G|2182
7OF4|1|A|C|2183
7OF4|1|A|A|2184
7OF4|1|A|G|2185

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain C

Putative GTP-binding protein 6

Chain J

39S ribosomal protein L11, mitochondrial

Chain l

39S ribosomal protein L54, mitochondrial