HL_7OF5_012

3D structure

PDB id

7OF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAACAGC

Length

8 nucleotides

Bulged bases

7OF5|1|A|A|2110, 7OF5|1|A|G|2113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OF5_012 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.1267

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

7OF5|1|A|G|2107
7OF5|1|A|G|2108
7OF5|1|A|A|2109
7OF5|1|A|A|2110
7OF5|1|A|C|2111
7OF5|1|A|A|2112
7OF5|1|A|G|2113
7OF5|1|A|C|2114

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain I

39S ribosomal protein L10, mitochondrial

Chain N

39S ribosomal protein L16, mitochondrial

Chain o

Ribosomal protein 63, mitochondrial