HL_7OF5_030

3D structure

PDB id

7OF5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human mitochondrial ribosome large subunit assembly intermediate in complex with MTERF4-NSUN4 and GTPBP5 (dataset2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGCAGCCG

Length

8 nucleotides

Bulged bases

7OF5|1|A|G|3016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OF5_030 not in the Motif Atlas

Homologous match to HL_7A0S_060

Geometric discrepancy: 0.1567

The information below is about HL_7A0S_060

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

7OF5|1|A|U|3015
7OF5|1|A|G|3016
7OF5|1|A|C|3017
7OF5|1|A|A|3018
7OF5|1|A|G|3019
7OF5|1|A|C|3020
7OF5|1|A|C|3021
7OF5|1|A|G|3022

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 4

39S ribosomal protein L36, mitochondrial

Chain x

Mitochondrial ribosome-associated GTPase 2