HL_7OF6_015

3D structure

PDB id

7OF6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of mature human mitochondrial ribosome large subunit in complex with GTPBP6 (PTC conformation 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGUUCAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OF6_015 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.1392

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7OF6|1|A|C|2202
7OF6|1|A|G|2203
7OF6|1|A|U|2204
7OF6|1|A|U|2205
7OF6|1|A|C|2206
7OF6|1|A|A|2207
7OF6|1|A|A|2208
7OF6|1|A|G|2209

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 4

39S ribosomal protein L36, mitochondrial

Chain C

Putative GTP-binding protein 6

Chain J

39S ribosomal protein L11, mitochondrial