3D structure

PDB id
7OG4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human mitochondrial ribosome in complex with P/E-tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
AACCCAAAU
Length
9 nucleotides
Bulged bases
None detected
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7OG4_031 not in the Motif Atlas
Geometric match to HL_2Y8W_001
Geometric discrepancy: 0.3769
The information below is about HL_2Y8W_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_40612.1
Basepair signature
cWW
Number of instances in this motif group
3

Unit IDs

7OG4|1|XA|A|2064
7OG4|1|XA|A|2065
7OG4|1|XA|C|2066
7OG4|1|XA|C|2067
7OG4|1|XA|C|2068
7OG4|1|XA|A|2072
7OG4|1|XA|A|2073
7OG4|1|XA|A|2074
7OG4|1|XA|U|2075

Current chains

Chain XA
16S mitochondrial rRNA

Nearby chains

Chain 6
39S ribosomal protein L38, mitochondrial
Chain XN
39S ribosomal protein L16, mitochondrial
Chain XW
39S ribosomal protein L27, mitochondrial
Chain XZ
39S ribosomal protein L30, mitochondrial
Chain f
39S ribosomal protein L48, mitochondrial

Coloring options:


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