HL_7OH3_059

3D structure

PDB id

7OH3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population B from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGGAAUUUG

Length

9 nucleotides

Bulged bases

7OH3|1|1|G|2777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OH3_059 not in the Motif Atlas

Homologous match to HL_8C3A_061

Geometric discrepancy: 0.153

The information below is about HL_8C3A_061

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

7OH3|1|1|C|2776
7OH3|1|1|G|2777
7OH3|1|1|G|2778
7OH3|1|1|A|2779
7OH3|1|1|A|2780
7OH3|1|1|U|2781
7OH3|1|1|U|2782
7OH3|1|1|U|2783
7OH3|1|1|G|2784

Current chains

Chain 1

25S rRNA

Nearby chains

Chain L

60S ribosomal protein L13-A

Chain a

60S ribosomal protein L28

Chain i

60S ribosomal protein L36-A