HL_7OHP_009

3D structure

PDB id

7OHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUUCC

Length

6 nucleotides

Bulged bases

7OHP|1|1|U|310

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHP_009 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3961

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

7OHP|1|1|G|303
7OHP|1|1|G|304
7OHP|1|1|U|305
7OHP|1|1|U|310
7OHP|1|1|C|311
7OHP|1|1|C|312

Current chains

Chain 1

25S rRNA

Nearby chains

Chain N

60S ribosomal protein L15-A