HL_7OHP_038
3D structure
- PDB id
- 7OHP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAGCGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OHP_038 not in the Motif Atlas
- Homologous match to HL_8C3A_229
- Geometric discrepancy: 0.5348
- The information below is about HL_8C3A_229
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_61933.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
7OHP|1|2|C|47
7OHP|1|2|A|48
7OHP|1|2|G|49
7OHP|1|2|C|50
7OHP|1|2|G|51
7OHP|1|2|A|52
7OHP|1|2|A|53
7OHP|1|2|A|54
7OHP|1|2|U|55
7OHP|1|2|G|56
Current chains
- Chain 2
- 5.8S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
- Chain v
- Nucleolar protein 16
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