HL_7OHP_040

3D structure

PDB id

7OHP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCACC

Length

5 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHP_040 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.2057

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7OHP|1|2|G|107
7OHP|1|2|C|108
7OHP|1|2|A|109
7OHP|1|2|C|110
7OHP|1|2|C|115

Current chains

Chain 2

5.8S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain j

60S ribosomal protein L37-A