HL_7OHR_019

3D structure

PDB id

7OHR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population E from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

4.72 Å

Loop

Sequence

ACGUU

Length

5 nucleotides

Bulged bases

7OHR|1|1|G|878, 7OHR|1|1|U|879

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHR_019 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.3401

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7OHR|1|1|A|876
7OHR|1|1|C|877
7OHR|1|1|G|878
7OHR|1|1|U|879
7OHR|1|1|U|885

Current chains

Chain 1

25S rRNA

Nearby chains

Chain I

Nucleolar complex-associated protein 3

Chain l

60S ribosome subunit biogenesis protein NIP7

Chain q

25S rRNA (cytosine(2870)-C(5))-methyltransferase