HL_7OHR_043

3D structure

PDB id

7OHR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population E from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

4.72 Å

Loop

Sequence

GAUUGUUCACC

Length

11 nucleotides

Bulged bases

7OHR|1|1|G|2922

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHR_043 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.1407

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

7OHR|1|1|G|2918
7OHR|1|1|A|2919
7OHR|1|1|U|2920
7OHR|1|1|U|2921
7OHR|1|1|G|2922
7OHR|1|1|U|2923
7OHR|1|1|U|2924
7OHR|1|1|C|2925
7OHR|1|1|A|2926
7OHR|1|1|C|2927
7OHR|1|1|C|2928

Current chains

Chain 1

25S rRNA

Nearby chains

Chain V

60S ribosomal protein L23-A

Chain b

Nucleolar GTP-binding protein 1