HL_7OHR_044

3D structure

PDB id

7OHR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population E from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

4.72 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

7OHR|1|1|U|2965

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHR_044 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.388

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

7OHR|1|1|C|2963
7OHR|1|1|G|2964
7OHR|1|1|U|2965
7OHR|1|1|G|2966
7OHR|1|1|A|2967
7OHR|1|1|G|2968

Current chains

Chain 1

25S rRNA

Nearby chains

Chain l

60S ribosome subunit biogenesis protein NIP7

Chain r

Ribosome biogenesis protein NSA2