HL_7OHS_015

3D structure

PDB id

7OHS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population F from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

4.38 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

7OHS|1|1|U|643

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHS_015 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.2039

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

7OHS|1|1|U|640
7OHS|1|1|C|641
7OHS|1|1|U|642
7OHS|1|1|U|643
7OHS|1|1|G|644
7OHS|1|1|A|645
7OHS|1|1|A|646
7OHS|1|1|A|647
7OHS|1|1|C|648
7OHS|1|1|A|649

Current chains

Chain 1

25S rRNA

Nearby chains

Chain e

60S ribosomal protein L32