RNA 3D Hub //

7OHS Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7OHS_0011/1/38:45No text annotation
HL_7OHS_0021/1/69:74No text annotation
homologous
HL_8C3A_002
NA
HL_7OHS_0031/1/90:96No text annotation
homologous
HL_8C3A_003
NA
HL_7OHS_0041/1/132:136No text annotation
homologous
HL_5TBW_004
NA
HL_7OHS_0051/1/194:201T-loop with 2 stacked bulged bases
homologous
HL_8C3A_005
NA
HL_7OHS_0061/1/208:212No text annotation
homologous
HL_5TBW_006
NA
HL_7OHS_0071/1/216:224T-loop with unstacked turn
homologous
HL_8C3A_007
NA
HL_7OHS_0081/1/278:287No text annotation
homologous
HL_8C3A_008
NA
HL_7OHS_0101/1/357:362GNRA
homologous
HL_8C3A_010
NA
HL_7OHS_0111/1/382:387GNRA
homologous
HL_5TBW_011
NA
HL_7OHS_0121/1/463:466Mini UNCG
geometric
HL_7A0S_039
HL_48778.2
HL_7OHS_0441/1/542:549No text annotation
HL_7OHS_0141/1/599:604GNRA
homologous
HL_5TBW_013
NA
HL_7OHS_0151/1/640:649No text annotation
geometric
HL_7RQB_011
NA
HL_7OHS_0451/1/687:693No text annotation
geometric
HL_5J7L_151
HL_80922.2
HL_7OHS_0171/1/732:737GNRA
homologous
HL_5TBW_017
NA
HL_7OHS_0471/1/1126:1132No text annotation
HL_7OHS_0221/1/1148:1155No text annotation
homologous
HL_5TBW_026
NA
HL_7OHS_0231/1/1239:1249No text annotation
homologous
HL_8C3A_027
NA
HL_7OHS_0241/1/1267:1274GNRA wlth tandem sheared
homologous
HL_8C3A_028
NA
HL_7OHS_0251/1/1347:1357No text annotation
homologous
HL_8C3A_029
NA
HL_7OHS_0261/1/1403:1408GNRA
homologous
HL_8C3A_030
NA
HL_7OHS_0281/1/2369:2378No text annotation
geometric
HL_2ZNI_001
HL_75660.5
HL_7OHS_0301/1/2897:2904No text annotation
homologous
HL_8C3A_063
NA
HL_7OHS_0461/1/3018:3036No text annotation
HL_7OHS_0311/1/3025:3030GNRA
homologous
HL_8C3A_066
NA
HL_7OHS_0321/1/3064:3077No text annotation
HL_7OHS_0331/1/3110:3124No text annotation
homologous
HL_8C3A_068
NA
HL_7OHS_0341/1/3194:3199No text annotation
geometric
HL_5TBW_044
NA
HL_7OHS_0351/1/3240:3247No text annotation
homologous
HL_5TBW_069
NA
HL_7OHS_0361/1/3303:3311No text annotation
geometric
HL_5J7L_201
HL_64690.6
HL_7OHS_0381/2/47:56No text annotation
geometric
HL_6JXM_002
HL_31585.4
HL_7OHS_0391/2/69:89No text annotation
homologous
HL_8P4V_073
NA
HL_7OHS_0421/6/12:16No text annotation
HL_7OHS_0431/6/37:42No text annotation

Problematic loops

#loop idProblemSequence
HL_7OHS_009No text annotation
HL_7OHS_013No text annotation
HL_7OHS_016No text annotation
HL_7OHS_018No text annotation
HL_7OHS_019No text annotation
HL_7OHS_020No text annotation
HL_7OHS_021No text annotation
HL_7OHS_027Externally structured
HL_7OHS_029No text annotation
HL_7OHS_037No text annotation
HL_7OHS_040No text annotation
HL_7OHS_041No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7OHS_0011/1/7:8,
1/2/150:152		Single bulged C
homologous
IL_8C3A_002
NA
IL_7OHS_0021/1/13:15,
1/2/144:145		Single bulged U
homologous
IL_8C3A_003
NA
IL_7OHS_0031/1/27:28,
1/1/56:58		No text annotation
homologous
IL_8C3A_004
NA
IL_7OHS_0041/1/31:38,
1/1/45:53		No text annotation
homologous
IL_8C3A_005
NA
IL_7OHS_0051/1/82:89,
1/1/97:103		No text annotation
homologous
IL_8C3A_006
NA
IL_7OHS_0061/1/123:124,
1/1/144:149		No text annotation
geometric
IL_5TBW_007
NA
IL_7OHS_0071/1/125:127,
1/1/141:143		Isolated non-canonical cWW pair
homologous
IL_8C3A_008
NA
IL_7OHS_0081/1/164:166,
1/1/256:257		Single bulged A
geometric
IL_7RQB_019
NA
IL_7OHS_0091/1/169:171,
1/1/247:253		No text annotation
IL_7OHS_0101/1/177:178,
1/1/238:241		No text annotation
geometric
IL_5TBW_501
NA
IL_7OHS_0111/1/189:191,
1/1/204:205		Single bulged U
homologous
IL_8C3A_013
NA
IL_7OHS_0121/1/337:339,
1/2/25:26		Single bulged A
homologous
IL_8C3A_014
NA
IL_7OHS_0131/1/376:379,
1/1/390:403		No text annotation
homologous
IL_8C3A_015
NA
IL_7OHS_0811/1/404:411,
1/2/12:19		No text annotation
IL_7OHS_0151/1/429:431,
1/1/628:630		Isolated non-canonical cWW pair
homologous
IL_5TBW_016
NA
IL_7OHS_0161/1/445:449,
1/1/485:489		Triple non-canonical cWW pairs
geometric
IL_5BTM_001
IL_49751.4
IL_7OHS_0171/1/452:454,
1/1/476:482		No text annotation
IL_7OHS_0181/1/462:463,
1/1/466:468		No text annotation
IL_7OHS_0191/1/512:513,
1/1/577:579		Single bulged A
homologous
IL_8C3A_020
NA
IL_7OHS_0711/1/517:524,
1/1/568:573		No text annotation
IL_7OHS_0211/1/531:538,
1/1/553:561		No text annotation
homologous
IL_5TBW_020
NA
IL_7OHS_0821/1/668:670,
1/1/792:794		Isolated non-canonical cWW pair
homologous
IL_8P9A_249
IL_87907.2
IL_7OHS_0231/1/680:684,
1/1/696:700		No text annotation
homologous
IL_5TBW_022
NA
IL_7OHS_0241/1/725:728,
1/1/741:745		No text annotation
homologous
IL_8C3A_025
NA
IL_7OHS_0251/1/753:757,
1/1/774:779		No text annotation
IL_7OHS_0261/1/803:805,
1/1/938:940		Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_7OHS_0271/1/805:809,
1/1/931:938		tHW-tHW cross-strand stack
geometric
IL_5TBW_028
NA
IL_7OHS_0281/1/969:970,
1/1/1111:1113		No text annotation
homologous
IL_8C3A_038
NA
IL_7OHS_0291/1/975:981,
1/1/1102:1106		No text annotation
IL_7OHS_0301/1/983:985,
1/1/1099:1100		Single bulged G
homologous
IL_8C3A_040
NA
IL_7OHS_0321/1/1120:1122,
1/1/1136:1138		Isolated non-canonical cWW pair
homologous
IL_8C3A_049
NA
IL_7OHS_0741/1/1120:1125,
1/1/1133:1138		No text annotation
IL_7OHS_0331/1/1167:1171,
1/1/1328:1332		UAA/GAN
homologous
IL_8C3A_051
NA
IL_7OHS_0341/1/1173:1180,
1/1/1325:1326		SSU/LSU pseudoknot
geometric
IL_5TBW_049
NA
IL_7OHS_0351/1/1180:1182,
1/1/1324:1325		Single bulged U
homologous
IL_5TBW_050
NA
IL_7OHS_0361/1/1186:1194,
1/1/1314:1320		No text annotation
IL_7OHS_0381/1/1207:1209,
1/1/1296:1297		Single bulged U
homologous
IL_5TBW_053
NA
IL_7OHS_0391/1/1218:1226,
1/1/1283:1287		Kink-turn
homologous
IL_5TBW_054
NA
IL_7OHS_0401/1/1234:1238,
1/1/1250:1254		No text annotation
homologous
IL_8P9A_283
IL_16218.2
IL_7OHS_0411/1/1262:1266,
1/1/1275:1277		Major groove platform with extra cWW
homologous
IL_8C3A_059
NA
IL_7OHS_0421/1/1376:1378,
1/1/1428:1431		Isolated cWS basepair
homologous
IL_5TBW_057
NA
IL_7OHS_0431/1/1385:1387,
1/1/1420:1421		Single bulged A
homologous
IL_8C3A_062
NA
IL_7OHS_0441/1/1388:1395,
1/1/1415:1419		Kink-turn
geometric
IL_3V7E_002
IL_70923.9
IL_7OHS_0451/1/1398:1400,
1/1/1411:1412		Single bulged A
geometric
IL_5WWT_001
IL_31462.7
IL_7OHS_0461/1/1444:1450,
1/1/2354:2359		No text annotation
homologous
IL_8C3A_065
NA
IL_7OHS_0471/1/2833:2839,
1/1/2849:2855		No text annotation
IL_7OHS_0831/1/2889:2894,
1/1/2907:2914		No text annotation
IL_7OHS_0491/1/3004:3007,
1/1/3139:3144		Double sheared
homologous
IL_8C3A_123
NA
IL_7OHS_0501/1/3012:3014,
1/1/3040:3042		Isolated non-canonical cWW pair
homologous
IL_5TBW_115
NA
IL_7OHS_0511/1/3018:3025,
1/1/3030:3036		8x7 Sarcin-Ricin; G-bulge
geometric
IL_7A0S_045
IL_04346.10
IL_7OHS_0521/1/3047:3051,
1/1/3091:3094		Major groove minor groove platform with tHH
geometric
IL_8C3A_126
NA
IL_7OHS_0531/1/3051:3059,
1/1/3084:3091		No text annotation
IL_7OHS_0541/1/3063:3064,
1/1/3077:3080		Multiple bulged bases
geometric
IL_5TBW_119
NA
IL_7OHS_0551/1/3103:3107,
1/1/3127:3131		UAA/GAN
homologous
IL_8C3A_129
NA
IL_7OHS_0561/1/3177:3179,
1/1/3210:3211		Single bulged A
geometric
IL_5TBW_123
NA
IL_7OHS_0571/1/3179:3188,
1/1/3204:3210		No text annotation
homologous
IL_5TBW_124
NA
IL_7OHS_0581/1/3192:3194,
1/1/3199:3200		Single stack bend
geometric
IL_4V9F_081
IL_26793.1
IL_7OHS_0591/1/3225:3229,
1/1/3258:3260		No text annotation
homologous
IL_8C3A_133
NA
IL_7OHS_0601/1/3233:3235,
1/1/3252:3254		Isolated non-canonical cWW pair
homologous
IL_5TBW_127
NA
IL_7OHS_0611/1/3235:3238,
1/1/3249:3252		Tandem non-canonical cWW pairs
geometric
IL_5EW4_001
IL_43644.1
IL_7OHS_0621/1/3300:3303,
1/1/3311:3314		Tandem non-canonical cWW pairs
geometric
IL_5EW4_002
IL_85033.2
IL_7OHS_0631/1/3318:3320,
1/1/3387:3388		Single bulged U
homologous
IL_8C3A_136
NA
IL_7OHS_0641/1/3324:3325,
1/1/3381:3383		No text annotation
IL_7OHS_0651/1/3328:3330,
1/1/3373:3378		No text annotation
homologous
IL_8C3A_138
NA
IL_7OHS_0791/1/3332:3337,
1/1/3367:3371		No text annotation
homologous
IL_8C3A_139
NA
IL_7OHS_0671/2/64:66,
1/2/93:96		Isolated non-canonical cWW pair
geometric
IL_5TBW_145
NA
IL_7OHS_0681/2/68:69,
1/2/89:91		Single bulged U
homologous
IL_5TBW_146
NA
IL_7OHS_0691/6/26:27,
1/6/51:54		Multiple bulged bases
geometric
IL_4V88_392
NA
IL_7OHS_0701/6/30:35,
1/6/44:48		No text annotation

Problematic loops

#loop idProblemSequence
IL_7OHS_014No text annotation
IL_7OHS_020No text annotation
IL_7OHS_022Tandem non-canonical cWW pairs
IL_7OHS_072Isolated cWH basepair
IL_7OHS_073No text annotation
IL_7OHS_031No text annotation
IL_7OHS_037No text annotation
IL_7OHS_048No text annotation
IL_7OHS_075No text annotation
IL_7OHS_076No text annotation
IL_7OHS_077Isolated non-canonical cWW pair
IL_7OHS_078No text annotation
IL_7OHS_084No text annotation
IL_7OHS_066No text annotation
IL_7OHS_080No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7OHS_0011/1/113:123,
1/1/149:158,
1/1/263:267		No text annotation
homologous
J3_8P9A_042
J3_19664.1
J3_7OHS_0071/1/113:124,
1/1/144:158,
1/1/263:267		No text annotation
J3_7OHS_0081/1/340:356,
1/1/363:368,
1/2/21:24		No text annotation
homologous
J3_8C3A_047
NA
J3_7OHS_0021/1/369:376,
1/1/403:404,
1/2/19:20		No text annotation
homologous
J3_5TBW_002
NA
J3_7OHS_0091/1/436:442,
1/1/492:495,
1/1/618:623		No text annotation
J3_7OHS_0031/1/502:503,
1/1/588:597,
1/1/606:611		No text annotation
homologous
J3_5TBW_003
NA
J3_7OHS_0041/1/1230:1232,
1/1/1256:1262,
1/1/1277:1279		No text annotation
homologous
J3_5TBW_007
NA
J3_7OHS_0051/1/3298:3300,
1/1/3314:3318,
1/1/3388:3390		No text annotation
homologous
J3_5TBW_015
NA
J3_7OHS_0061/2/44:45,
1/2/58:64,
1/2/96:100		No text annotation
homologous
J3_8C3A_060
NA
J4_7OHS_0011/1/112:113,
1/1/267:272,
1/1/293:299,
1/1/316:319		No text annotation
homologous
J4_8P9A_012
J4_45801.6
J4_7OHS_0021/1/185:189,
1/1/205:208,
1/1/212:214,
1/1/226:231		No text annotation
homologous
J4_8P9A_013
J4_12410.1
J4_7OHS_0031/1/3010:3014,
1/1/3040:3043,
1/1/3098:3100,
1/1/3134:3136		No text annotation
J5_7OHS_0011/1/20:22,
1/2/35:42,
1/2/102:107,
1/2/115:116,
1/2/137:139		No text annotation
homologous
J5_8C3A_001
NA
J5_7OHS_0021/1/658:663,
1/1/799:802,
1/1/941:944,
1/1/1375:1376,
1/1/1431:1437		No text annotation
J6_7OHS_0011/1/22:27,
1/1/58:68,
1/1/75:79,
1/1/106:110,
1/1/321:331,
1/2/32:35		No text annotation
J6_7OHS_0021/1/949:968,
1/1/1114:1117,
1/1/1141:1146,
1/1/1157:1161,
1/1/1338:1339,
1/1/1365:1370		No text annotation

Problematic loops

No problematic loops


Coloring options:
Copyright 2025 BGSU RNA group. Page generated in 0.1311 s