RNA 3D Hub //

7OHS Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7OHS_0021/1/69:74No text annotation
homologous
HL_8C3A_002
NA
HL_7OHS_0051/1/194:201T-loop with 2 stacked bulged bases
homologous
HL_8C3A_005
NA
HL_7OHS_0071/1/216:224T-loop with unstacked turn
homologous
HL_8C3A_007
NA
HL_7OHS_0101/1/357:362GNRA
homologous
HL_8C3A_010
NA
HL_7OHS_0451/1/687:693No text annotation
geometric
HL_5J7L_151
NA
HL_7OHS_0261/1/1403:1408GNRA
homologous
HL_8C3A_030
NA
HL_7OHS_0351/1/3240:3247No text annotation
homologous
HL_5TBW_069
NA
HL_7OHS_0381/2/47:56tRNA anticodon loop
geometric
HL_6JXM_002
NA
HL_7OHS_0391/2/69:89No text annotation
homologous
HL_8P4V_073
NA

Problematic loops

#loop idProblemSequence
HL_7OHS_001No text annotation
HL_7OHS_003No text annotation
HL_7OHS_004No text annotation
HL_7OHS_006No text annotation
HL_7OHS_008No text annotation
HL_7OHS_009No text annotation
HL_7OHS_011GNRA
HL_7OHS_012Mini UNCG
HL_7OHS_013No text annotation
HL_7OHS_044No text annotation
HL_7OHS_014GNRA
HL_7OHS_015No text annotation
HL_7OHS_016No text annotation
HL_7OHS_017GNRA
HL_7OHS_018No text annotation
HL_7OHS_019No text annotation
HL_7OHS_020No text annotation
HL_7OHS_021No text annotation
HL_7OHS_047No text annotation
HL_7OHS_022No text annotation
HL_7OHS_023No text annotation
HL_7OHS_024GNRA wlth tandem sheared
HL_7OHS_025No text annotation
HL_7OHS_027Externally structured
HL_7OHS_028No text annotation
HL_7OHS_029No text annotation
HL_7OHS_030No text annotation
HL_7OHS_046No text annotation
HL_7OHS_031GNRA
HL_7OHS_032No text annotation
HL_7OHS_033No text annotation
HL_7OHS_034No text annotation
HL_7OHS_036No text annotation
HL_7OHS_037No text annotation
HL_7OHS_040No text annotation
HL_7OHS_041No text annotation
HL_7OHS_042No text annotation
HL_7OHS_043No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7OHS_0051/1/82:89,
1/1/97:103		No text annotation
homologous
IL_8C3A_006
NA
IL_7OHS_0061/1/123:124,
1/1/144:149		No text annotation
geometric
IL_5TBW_007
NA
IL_7OHS_0071/1/125:127,
1/1/141:143		Isolated non-canonical cWW pair
homologous
IL_8C3A_008
NA
IL_7OHS_0091/1/169:171,
1/1/247:253		No text annotation
IL_7OHS_0121/1/337:339,
1/2/25:26		Single bulged A
homologous
IL_8C3A_014
NA
IL_7OHS_0131/1/376:379,
1/1/390:403		No text annotation
homologous
IL_8C3A_015
NA
IL_7OHS_0161/1/445:449,
1/1/485:489		Triple non-canonical cWW pairs
geometric
IL_5BTM_001
IL_71154.1
IL_7OHS_0821/1/668:670,
1/1/792:794		Isolated non-canonical cWW pair
homologous
IL_8P9A_249
IL_01003.1
IL_7OHS_0231/1/680:684,
1/1/696:700		No text annotation
homologous
IL_5TBW_022
NA
IL_7OHS_0261/1/803:805,
1/1/938:940		Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_7OHS_0331/1/1167:1171,
1/1/1328:1332		UAA/GAN
homologous
IL_8C3A_051
NA
IL_7OHS_0341/1/1173:1180,
1/1/1325:1326		SSU/LSU pseudoknot
geometric
IL_5TBW_049
NA
IL_7OHS_0351/1/1180:1182,
1/1/1324:1325		Single bulged U
homologous
IL_5TBW_050
NA
IL_7OHS_0421/1/1376:1378,
1/1/1428:1431		Isolated cWS basepair
homologous
IL_5TBW_057
NA
IL_7OHS_0431/1/1385:1387,
1/1/1420:1421		Single bulged A
homologous
IL_8C3A_062
NA
IL_7OHS_0441/1/1388:1395,
1/1/1415:1419		Kink-turn
geometric
IL_3V7E_002
NA
IL_7OHS_0451/1/1398:1400,
1/1/1411:1412		Single bulged A
geometric
IL_5WWT_001
IL_14190.1
IL_7OHS_0571/1/3179:3188,
1/1/3204:3210		No text annotation
homologous
IL_5TBW_124
NA
IL_7OHS_0671/2/64:66,
1/2/93:96		Isolated non-canonical cWW pair
geometric
IL_5TBW_145
NA

Problematic loops

#loop idProblemSequence
IL_7OHS_001Single bulged C
IL_7OHS_002Single bulged U
IL_7OHS_003No text annotation
IL_7OHS_004No text annotation
IL_7OHS_008Single bulged A
IL_7OHS_010No text annotation
IL_7OHS_011Single bulged U
IL_7OHS_081No text annotation
IL_7OHS_014No text annotation
IL_7OHS_015Isolated non-canonical cWW pair
IL_7OHS_017No text annotation
IL_7OHS_018No text annotation
IL_7OHS_019Single bulged A
IL_7OHS_071No text annotation
IL_7OHS_020No text annotation
IL_7OHS_021No text annotation
IL_7OHS_022Tandem non-canonical cWW pairs
IL_7OHS_024No text annotation
IL_7OHS_025No text annotation
IL_7OHS_027tHW-tHW cross-strand stack
IL_7OHS_028No text annotation
IL_7OHS_072Isolated cWH basepair
IL_7OHS_029No text annotation
IL_7OHS_073No text annotation
IL_7OHS_030Single bulged G
IL_7OHS_031No text annotation
IL_7OHS_032Isolated non-canonical cWW pair
IL_7OHS_074No text annotation
IL_7OHS_036No text annotation
IL_7OHS_037No text annotation
IL_7OHS_038Single bulged U
IL_7OHS_039Kink-turn
IL_7OHS_040No text annotation
IL_7OHS_041Major groove platform with extra cWW
IL_7OHS_046No text annotation
IL_7OHS_047No text annotation
IL_7OHS_083No text annotation
IL_7OHS_048No text annotation
IL_7OHS_049Double sheared
IL_7OHS_050Isolated non-canonical cWW pair
IL_7OHS_0518x7 Sarcin-Ricin; G-bulge
IL_7OHS_075No text annotation
IL_7OHS_052Major groove minor groove platform with tHH
IL_7OHS_053No text annotation
IL_7OHS_054Multiple bulged bases
IL_7OHS_055UAA/GAN
IL_7OHS_056Single bulged A
IL_7OHS_058Single stack bend
IL_7OHS_059No text annotation
IL_7OHS_060Isolated non-canonical cWW pair
IL_7OHS_061Tandem non-canonical cWW pairs
IL_7OHS_076No text annotation
IL_7OHS_062Tandem non-canonical cWW pairs
IL_7OHS_063Single bulged U
IL_7OHS_077Isolated non-canonical cWW pair
IL_7OHS_078No text annotation
IL_7OHS_084No text annotation
IL_7OHS_064No text annotation
IL_7OHS_065No text annotation
IL_7OHS_066No text annotation
IL_7OHS_079No text annotation
IL_7OHS_068Single bulged U
IL_7OHS_069Multiple bulged bases
IL_7OHS_070No text annotation
IL_7OHS_080No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7OHS_0011/1/113:123,
1/1/149:158,
1/1/263:267		No text annotation
homologous
J3_8P9A_042
J3_69230.1
J3_7OHS_0071/1/113:124,
1/1/144:158,
1/1/263:267		No text annotation
J3_7OHS_0081/1/340:356,
1/1/363:368,
1/2/21:24		No text annotation
homologous
J3_8C3A_047
NA
J3_7OHS_0021/1/369:376,
1/1/403:404,
1/2/19:20		No text annotation
homologous
J3_5TBW_002
NA
J3_7OHS_0091/1/436:442,
1/1/492:495,
1/1/618:623		No text annotation
J3_7OHS_0031/1/502:503,
1/1/588:597,
1/1/606:611		No text annotation
homologous
J3_5TBW_003
NA
J3_7OHS_0061/2/44:45,
1/2/58:64,
1/2/96:100		No text annotation
homologous
J3_8C3A_060
NA
J4_7OHS_0011/1/112:113,
1/1/267:272,
1/1/293:299,
1/1/316:319		No text annotation
homologous
J4_8P9A_012
J4_94698.1
J5_7OHS_0011/1/20:22,
1/2/35:42,
1/2/102:107,
1/2/115:116,
1/2/137:139		No text annotation
homologous
J5_8C3A_001
NA
J5_7OHS_0021/1/658:663,
1/1/799:802,
1/1/941:944,
1/1/1375:1376,
1/1/1431:1437		No text annotation
J6_7OHS_0011/1/22:27,
1/1/58:68,
1/1/75:79,
1/1/106:110,
1/1/321:331,
1/2/32:35		No text annotation
J6_7OHS_0021/1/949:968,
1/1/1114:1117,
1/1/1141:1146,
1/1/1157:1161,
1/1/1338:1339,
1/1/1365:1370		No text annotation

Problematic loops

#loop idProblemSequence
J3_7OHS_004No text annotation
J3_7OHS_005No text annotation
J4_7OHS_002No text annotation
J4_7OHS_003No text annotation

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