HL_7OHS_028

3D structure

PDB id

7OHS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particle population F from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

4.38 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

7OHS|1|1|A|2373

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHS_028 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.2708

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7OHS|1|1|G|2369
7OHS|1|1|G|2370
7OHS|1|1|G|2371
7OHS|1|1|A|2372
7OHS|1|1|A|2373
7OHS|1|1|C|2374
7OHS|1|1|G|2375
7OHS|1|1|G|2376
7OHS|1|1|G|2377
7OHS|1|1|C|2378

Current chains

Chain 1

25S rRNA

Nearby chains

Chain O

60S ribosomal protein L16-A

Chain e

60S ribosomal protein L32

Chain f

60S ribosomal protein L33-A