HL_7OHT_019

3D structure

PDB id

7OHT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population A

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UUAAACGAUAAG

Length

12 nucleotides

Bulged bases

7OHT|1|1|A|2637, 7OHT|1|1|C|2638

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHT_019 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.3378

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

7OHT|1|1|U|2633
7OHT|1|1|U|2634
7OHT|1|1|A|2635
7OHT|1|1|A|2636
7OHT|1|1|A|2637
7OHT|1|1|C|2638
7OHT|1|1|G|2639
7OHT|1|1|A|2640
7OHT|1|1|U|2641
7OHT|1|1|A|2642
7OHT|1|1|A|2643
7OHT|1|1|G|2645

Current chains

Chain 1

25S rRNA

Nearby chains

Chain w

Regulator of ribosome biosynthesis