7OHT Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7OHT_001 | T-loop with 2 stacked bulged bases | ||
| HL_7OHT_002 | No text annotation | ||
| HL_7OHT_003 | T-loop with unstacked turn | ||
| HL_7OHT_004 | No text annotation | ||
| HL_7OHT_005 | No text annotation | ||
| HL_7OHT_006 | GNRA | ||
| HL_7OHT_007 | No text annotation | ||
| HL_7OHT_008 | No text annotation | ||
| HL_7OHT_009 | No text annotation | ||
| HL_7OHT_010 | No text annotation | ||
| HL_7OHT_011 | No text annotation | ||
| HL_7OHT_012 | Other HL | ||
| HL_7OHT_013 | No text annotation | ||
| HL_7OHT_014 | No text annotation | ||
| HL_7OHT_015 | GNRA wlth tandem sheared | ||
| HL_7OHT_016 | No text annotation | ||
| HL_7OHT_017 | Externally structured | ||
| HL_7OHT_018 | No text annotation | ||
| HL_7OHT_019 | No text annotation | ||
| HL_7OHT_020 | No text annotation | ||
| HL_7OHT_036 | No text annotation | ||
| HL_7OHT_038 | No text annotation | ||
| HL_7OHT_021 | No text annotation | ||
| HL_7OHT_022 | T-loop with 2 bulged bases not stacked | ||
| HL_7OHT_037 | GNRA | ||
| HL_7OHT_023 | No text annotation | ||
| HL_7OHT_024 | No text annotation | ||
| HL_7OHT_025 | Mini UNCG | ||
| HL_7OHT_026 | GNRA | ||
| HL_7OHT_027 | GNRA | ||
| HL_7OHT_028 | Externally structured | ||
| HL_7OHT_029 | No text annotation | ||
| HL_7OHT_030 | No text annotation | ||
| HL_7OHT_031 | No text annotation | ||
| HL_7OHT_032 | No text annotation | ||
| HL_7OHT_033 | Externally structured | ||
| HL_7OHT_034 | No text annotation | ||
| HL_7OHT_035 | Mini UNCG |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7OHT_045 | 1/1/3179:3188, 1/1/3204:3210 | No text annotation | homologous IL_5TBW_124 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7OHT_001 | Single bulged A | ||
| IL_7OHT_002 | Triple sheared with non-canonical cWW | ||
| IL_7OHT_003 | Single bulged A | ||
| IL_7OHT_004 | No text annotation | ||
| IL_7OHT_005 | No text annotation | ||
| IL_7OHT_006 | No text annotation | ||
| IL_7OHT_007 | Tandem non-canonical cWW pairs | ||
| IL_7OHT_063 | No text annotation | ||
| IL_7OHT_008 | No text annotation | ||
| IL_7OHT_009 | Isolated non-canonical cWW pair | ||
| IL_7OHT_064 | No text annotation | ||
| IL_7OHT_010 | UAA/GAN | ||
| IL_7OHT_011 | SSU/LSU pseudoknot | ||
| IL_7OHT_012 | Single bulged U | ||
| IL_7OHT_013 | No text annotation | ||
| IL_7OHT_014 | No text annotation | ||
| IL_7OHT_015 | Single bulged U | ||
| IL_7OHT_065 | No text annotation | ||
| IL_7OHT_016 | Kink-turn | ||
| IL_7OHT_017 | No text annotation | ||
| IL_7OHT_018 | Major groove platform with extra cWW | ||
| IL_7OHT_019 | No text annotation | ||
| IL_7OHT_066 | Tandem non-canonical cWW pairs | ||
| IL_7OHT_020 | Single bulged A | ||
| IL_7OHT_021 | No text annotation | ||
| IL_7OHT_022 | No text annotation | ||
| IL_7OHT_023 | No text annotation | ||
| IL_7OHT_067 | Isolated non-canonical cWW pair | ||
| IL_7OHT_024 | Tandem non-canonical cWW pairs | ||
| IL_7OHT_025 | Isolated non-canonical cWW pair | ||
| IL_7OHT_026 | No text annotation | ||
| IL_7OHT_027 | No text annotation | ||
| IL_7OHT_028 | Single stack bend | ||
| IL_7OHT_029 | No text annotation | ||
| IL_7OHT_030 | No text annotation | ||
| IL_7OHT_031 | Isolated non-canonical cWW pair | ||
| IL_7OHT_068 | No text annotation | ||
| IL_7OHT_032 | Major groove platform with intercalation | ||
| IL_7OHT_033 | Isolated non-canonical cWW pair | ||
| IL_7OHT_034 | No text annotation | ||
| IL_7OHT_035 | Double sheared | ||
| IL_7OHT_036 | Isolated non-canonical cWW pair | ||
| IL_7OHT_037 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_7OHT_038 | Major groove minor groove platform with tHH | ||
| IL_7OHT_039 | No text annotation | ||
| IL_7OHT_070 | No text annotation | ||
| IL_7OHT_040 | No text annotation | ||
| IL_7OHT_041 | UAA/GAN | ||
| IL_7OHT_042 | Isolated non-canonical cWW pair | ||
| IL_7OHT_043 | Isolated non-canonical cWW pair | ||
| IL_7OHT_044 | Single bulged A | ||
| IL_7OHT_046 | Isolated cWH basepair | ||
| IL_7OHT_071 | Single bulged U | ||
| IL_7OHT_047 | No text annotation | ||
| IL_7OHT_048 | Isolated non-canonical cWW pair | ||
| IL_7OHT_049 | Tandem non-canonical cWW pairs | ||
| IL_7OHT_050 | Tandem non-canonical cWW pairs | ||
| IL_7OHT_051 | Single bulged U | ||
| IL_7OHT_072 | Isolated non-canonical cWW with bulges | ||
| IL_7OHT_052 | No text annotation | ||
| IL_7OHT_053 | No text annotation | ||
| IL_7OHT_054 | No text annotation | ||
| IL_7OHT_055 | No text annotation | ||
| IL_7OHT_056 | Double sheared; A in syn | ||
| IL_7OHT_057 | Minor groove platform related | ||
| IL_7OHT_058 | No text annotation | ||
| IL_7OHT_059 | Single stack bend | ||
| IL_7OHT_060 | Symmetric double minor groove platform | ||
| IL_7OHT_061 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_7OHT_069 | No text annotation | ||
| IL_7OHT_073 | No text annotation | ||
| IL_7OHT_062 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7OHT_002 | 1/1/983:987, 1/1/1062:1066, 1/1/1092:1100 | No text annotation | ||
| J3_7OHT_007 | 1/1/3171:3176, 1/1/3212:3220, 1/1/3265:3279 | No text annotation | homologous J3_8P9A_064 J3_03190.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7OHT_001 | No text annotation | ||
| J3_7OHT_003 | No text annotation | ||
| J3_7OHT_004 | No text annotation | ||
| J3_7OHT_005 | No text annotation | ||
| J3_7OHT_006 | No text annotation | ||
| J3_7OHT_008 | No text annotation | ||
| J4_7OHT_001 | No text annotation | ||
| J5_7OHT_001 | No text annotation | ||
| J7_7OHT_001 | No text annotation |
Coloring options: