HL_7OHT_021

3D structure

PDB id

7OHT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population A

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UUUCAGUGUGA

Length

11 nucleotides

Bulged bases

7OHT|1|1|C|2726, 7OHT|1|1|A|2727, 7OHT|1|1|U|2729, 7OHT|1|1|G|2730, 7OHT|1|1|G|2732

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OHT|1|1|U|2723
7OHT|1|1|U|2724
7OHT|1|1|U|2725
7OHT|1|1|C|2726
7OHT|1|1|A|2727
7OHT|1|1|G|2728
7OHT|1|1|U|2729
7OHT|1|1|G|2730
7OHT|1|1|U|2731
7OHT|1|1|G|2732
7OHT|1|1|A|2733

Current chains

Chain 1

25S rRNA

Nearby chains

Chain m

Nucleolar GTP-binding protein 2

Chain r

Ribosome biogenesis protein NSA2

Chain v

Ribosome biogenesis protein RPF2

Chain w

Regulator of ribosome biosynthesis