HL_7OHT_022
3D structure
- PDB id
- 7OHT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- AUGAAAGU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OHT_022 not in the Motif Atlas
- Geometric match to HL_4FRG_001
- Geometric discrepancy: 0.3413
- The information below is about HL_4FRG_001
- Detailed Annotation
- T-loop with 2 bulged bases not stacked
- Broad Annotation
- T-loop
- Motif group
- HL_13999.2
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 22
Unit IDs
7OHT|1|1|A|2743
7OHT|1|1|U|2744
7OHT|1|1|G|2745
7OHT|1|1|A|2746
7OHT|1|1|A|2747
7OHT|1|1|A|2748
7OHT|1|1|G|2749
7OHT|1|1|U|2750
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain D
- 60S ribosomal protein L5
- Chain m
- Nucleolar GTP-binding protein 2
- Chain v
- Ribosome biogenesis protein RPF2
- Chain w
- Regulator of ribosome biosynthesis
Coloring options: