HL_7OHT_025

3D structure

PDB id

7OHT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population A

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

7OHT|1|1|G|2922

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHT_025 not in the Motif Atlas

Geometric match to HL_5AH5_007

Geometric discrepancy: 0.1223

The information below is about HL_5AH5_007

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.1

Basepair signature

cWW-F

Number of instances in this motif group

37

Unit IDs

7OHT|1|1|U|2920
7OHT|1|1|U|2921
7OHT|1|1|G|2922
7OHT|1|1|U|2923
7OHT|1|1|U|2924
7OHT|1|1|C|2925
7OHT|1|1|A|2926

Current chains

Chain 1

25S rRNA

Nearby chains

Chain b

Nucleolar GTP-binding protein 1

Chain m

Nucleolar GTP-binding protein 2