HL_7OHU_019

3D structure

PDB id

7OHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAAA

Length

5 nucleotides

Bulged bases

7OHU|1|1|A|817

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHU_019 not in the Motif Atlas

Geometric match to HL_4WF9_011

Geometric discrepancy: 0.326

The information below is about HL_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

7OHU|1|1|U|814
7OHU|1|1|G|815
7OHU|1|1|A|816
7OHU|1|1|A|817
7OHU|1|1|A|926

Current chains

Chain 1

25S rRNA

Nearby chains

Chain j

60S ribosomal protein L37-A