7OHU Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7OHU_002 | 1/1/69:74 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_7OHU_004 | 1/1/132:136 | No text annotation | homologous HL_5TBW_004 NA | |
| HL_7OHU_005 | 1/1/194:201 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_7OHU_006 | 1/1/208:212 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_7OHU_007 | 1/1/216:224 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_7OHU_010 | 1/1/357:362 | GNRA | homologous HL_8C3A_010 NA | |
| HL_7OHU_015 | 1/1/640:649 | No text annotation | ||
| HL_7OHU_016 | 1/1/686:694 | No text annotation | homologous HL_8C3A_015 NA | |
| HL_7OHU_023 | 1/1/1148:1155 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_7OHU_024 | 1/1/1239:1249 | No text annotation | homologous HL_8C3A_027 NA | |
| HL_7OHU_026 | 1/1/1347:1357 | No text annotation | homologous HL_8C3A_029 NA | |
| HL_7OHU_027 | 1/1/1403:1408 | GNRA | homologous HL_8C3A_030 NA | |
| HL_7OHU_031 | 1/1/2897:2904 | No text annotation | homologous HL_8C3A_063 NA | |
| HL_7OHU_034 | 1/1/3110:3124 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_7OHU_036 | 1/1/3240:3247 | No text annotation | homologous HL_5TBW_069 NA | |
| HL_7OHU_040 | 1/2/69:89 | No text annotation | homologous HL_8P4V_073 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7OHU_001 | No text annotation | ||
| HL_7OHU_003 | No text annotation | ||
| HL_7OHU_008 | No text annotation | ||
| HL_7OHU_009 | No text annotation | ||
| HL_7OHU_011 | GNRA | ||
| HL_7OHU_012 | Externally structured | ||
| HL_7OHU_013 | No text annotation | ||
| HL_7OHU_014 | GNRA | ||
| HL_7OHU_017 | GNRA | ||
| HL_7OHU_018 | UNCG variation | ||
| HL_7OHU_019 | No text annotation | ||
| HL_7OHU_020 | Externally structured | ||
| HL_7OHU_021 | No text annotation | ||
| HL_7OHU_022 | Externally structured | ||
| HL_7OHU_025 | GNRA wlth tandem sheared | ||
| HL_7OHU_028 | Externally structured | ||
| HL_7OHU_029 | No text annotation | ||
| HL_7OHU_030 | No text annotation | ||
| HL_7OHU_032 | GNRA | ||
| HL_7OHU_033 | No text annotation | ||
| HL_7OHU_035 | No text annotation | ||
| HL_7OHU_037 | No text annotation | ||
| HL_7OHU_038 | Mini UNCG | ||
| HL_7OHU_039 | tRNA anticodon loop | ||
| HL_7OHU_041 | Externally structured |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7OHU_003 | 1/1/27:28, 1/1/56:58 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_7OHU_004 | 1/1/82:89, 1/1/97:103 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_7OHU_005 | 1/1/123:124, 1/1/144:149 | No text annotation | homologous IL_5TBW_007 NA | |
| IL_7OHU_006 | 1/1/125:127, 1/1/141:143 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_7OHU_009 | 1/1/189:191, 1/1/204:205 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_7OHU_011 | 1/1/337:339, 1/2/25:26 | Single bulged A | homologous IL_5TBW_013 NA | |
| IL_7OHU_012 | 1/1/376:379, 1/1/390:403 | No text annotation | homologous IL_8C3A_015 NA | |
| IL_7OHU_013 | 1/1/404:410, 1/2/13:19 | Triple sheared with non-canonical cWW | homologous IL_8C3A_016 NA | |
| IL_7OHU_014 | 1/1/429:431, 1/1/628:630 | Isolated non-canonical cWW pair | homologous IL_5TBW_016 NA | |
| IL_7OHU_016 | 1/1/512:513, 1/1/577:579 | Single bulged A | homologous IL_8C3A_020 NA | |
| IL_7OHU_017 | 1/1/517:525, 1/1/567:573 | No text annotation | homologous IL_5TBW_019 NA | |
| IL_7OHU_018 | 1/1/531:538, 1/1/553:561 | No text annotation | homologous IL_5TBW_020 NA | |
| IL_7OHU_076 | 1/1/668:670, 1/1/792:794 | Isolated non-canonical cWW pair | homologous IL_8CRE_023 NA | |
| IL_7OHU_020 | 1/1/680:684, 1/1/696:700 | No text annotation | homologous IL_5TBW_022 NA | |
| IL_7OHU_021 | 1/1/725:728, 1/1/741:745 | No text annotation | homologous IL_8C3A_025 NA | |
| IL_7OHU_022 | 1/1/752:753, 1/1/779:781 | Single bulged A | geometric IL_3MJA_001 NA | |
| IL_7OHU_024 | 1/1/803:805, 1/1/938:940 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_7OHU_027 | 1/1/969:970, 1/1/1111:1113 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_7OHU_031 | 1/1/1167:1171, 1/1/1328:1332 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_7OHU_032 | 1/1/1173:1180, 1/1/1325:1326 | Multiple bulged bases | geometric IL_1R3E_001 IL_44609.1 | |
| IL_7OHU_033 | 1/1/1180:1182, 1/1/1324:1325 | Single bulged U | homologous IL_5TBW_050 NA | |
| IL_7OHU_034 | 1/1/1186:1194, 1/1/1314:1320 | No text annotation | ||
| IL_7OHU_036 | 1/1/1207:1209, 1/1/1296:1297 | Single bulged U | homologous IL_5TBW_053 NA | |
| IL_7OHU_038 | 1/1/1234:1238, 1/1/1250:1254 | No text annotation | homologous IL_8C3A_058 NA | |
| IL_7OHU_039 | 1/1/1262:1266, 1/1/1275:1277 | Major groove platform with extra cWW | homologous IL_8C3A_059 NA | |
| IL_7OHU_040 | 1/1/1376:1378, 1/1/1428:1431 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_7OHU_041 | 1/1/1385:1387, 1/1/1420:1421 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_7OHU_042 | 1/1/1388:1395, 1/1/1415:1419 | Kink-turn | homologous IL_5TBW_059 NA | |
| IL_7OHU_043 | 1/1/1398:1400, 1/1/1411:1412 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_7OHU_044 | 1/1/1444:1450, 1/1/2354:2359 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_7OHU_048 | 1/1/3004:3007, 1/1/3139:3144 | Double sheared | homologous IL_8C3A_123 NA | |
| IL_7OHU_049 | 1/1/3012:3014, 1/1/3040:3042 | Isolated non-canonical cWW pair | homologous IL_5TBW_115 NA | |
| IL_7OHU_050 | 1/1/3018:3025, 1/1/3030:3036 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7A0S_007 IL_62167.1 | |
| IL_7OHU_055 | 1/1/3168:3170, 1/1/3280:3282 | Isolated non-canonical cWW pair | homologous IL_5TBW_122 NA | |
| IL_7OHU_056 | 1/1/3177:3179, 1/1/3210:3211 | Single bulged A | geometric IL_5TBW_123 NA | |
| IL_7OHU_057 | 1/1/3179:3188, 1/1/3204:3210 | No text annotation | homologous IL_5TBW_124 NA | |
| IL_7OHU_058 | 1/1/3193:3194, 1/1/3197:3199 | Single bulged U | geometric IL_5TBW_125 NA | |
| IL_7OHU_059 | 1/1/3225:3229, 1/1/3258:3260 | No text annotation | homologous IL_8C3A_133 NA | |
| IL_7OHU_061 | 1/1/3235:3238, 1/1/3249:3252 | Tandem non-canonical cWW pairs | geometric IL_6MWN_005 IL_71194.1 | |
| IL_7OHU_068 | 1/2/64:66, 1/2/93:96 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
| IL_7OHU_069 | 1/2/68:69, 1/2/89:91 | Single bulged U | geometric IL_5TBW_146 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7OHU_001 | Single bulged C | ||
| IL_7OHU_002 | Single bulged U | ||
| IL_7OHU_007 | No text annotation | ||
| IL_7OHU_075 | No text annotation | ||
| IL_7OHU_008 | Major groove platform | ||
| IL_7OHU_010 | Isolated cWH basepair | ||
| IL_7OHU_015 | Triple non-canonical cWW pairs | ||
| IL_7OHU_019 | Tandem non-canonical cWW pairs | ||
| IL_7OHU_023 | No text annotation | ||
| IL_7OHU_025 | tHW-tHW cross-strand stack | ||
| IL_7OHU_026 | Single stack bend | ||
| IL_7OHU_071 | Isolated cWH basepair | ||
| IL_7OHU_028 | No text annotation | ||
| IL_7OHU_029 | Single bulged G | ||
| IL_7OHU_030 | Isolated non-canonical cWW pair | ||
| IL_7OHU_072 | No text annotation | ||
| IL_7OHU_035 | No text annotation | ||
| IL_7OHU_037 | Kink-turn | ||
| IL_7OHU_077 | Isolated non-canonical cWW pair | ||
| IL_7OHU_045 | Tandem non-canonical cWW pairs | ||
| IL_7OHU_046 | tSH-tHW-tHS-cWW | ||
| IL_7OHU_047 | No text annotation | ||
| IL_7OHU_051 | Major groove minor groove platform with tHH | ||
| IL_7OHU_073 | Isolated near basepair | ||
| IL_7OHU_052 | No text annotation | ||
| IL_7OHU_053 | UAA/GAN | ||
| IL_7OHU_054 | Isolated non-canonical cWW pair | ||
| IL_7OHU_060 | Isolated non-canonical cWW pair | ||
| IL_7OHU_062 | Tandem non-canonical cWW pairs | ||
| IL_7OHU_063 | Single bulged U | ||
| IL_7OHU_064 | Single bulged U | ||
| IL_7OHU_065 | No text annotation | ||
| IL_7OHU_066 | No text annotation | ||
| IL_7OHU_067 | No text annotation | ||
| IL_7OHU_074 | Double sheared | ||
| IL_7OHU_070 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7OHU_001 | 1/1/113:123, 1/1/149:158, 1/1/263:267 | No text annotation | homologous J3_8P9A_042 J3_69230.1 | |
| J3_7OHU_008 | 1/1/113:124, 1/1/144:158, 1/1/263:267 | No text annotation | ||
| J3_7OHU_009 | 1/1/185:189, 1/1/205:214, 1/1/226:231 | No text annotation | homologous J3_8P9A_044 J3_97456.1 | |
| J3_7OHU_010 | 1/1/340:356, 1/1/363:368, 1/2/21:24 | No text annotation | homologous J3_8C3A_047 NA | |
| J3_7OHU_002 | 1/1/369:376, 1/1/403:404, 1/2/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_7OHU_011 | 1/1/369:379, 1/1/390:404, 1/2/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_7OHU_003 | 1/1/435:442, 1/1/492:495, 1/1/618:624 | No text annotation | ||
| J3_7OHU_004 | 1/1/502:503, 1/1/588:597, 1/1/606:611 | No text annotation | homologous J3_5TBW_003 NA | |
| J3_7OHU_012 | 1/1/3171:3176, 1/1/3212:3220, 1/1/3265:3279 | No text annotation | homologous J3_8P9A_064 J3_03190.1 | |
| J3_7OHU_007 | 1/2/44:45, 1/2/58:64, 1/2/96:100 | No text annotation | homologous J3_8C3A_060 NA | |
| J4_7OHU_001 | 1/1/112:113, 1/1/267:272, 1/1/293:299, 1/1/316:319 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
| J4_7OHU_002 | 1/1/185:189, 1/1/205:208, 1/1/212:214, 1/1/226:231 | No text annotation | homologous J4_8P9A_013 J4_43318.1 | |
| J4_7OHU_005 | 1/1/675:678, 1/1/702:721, 1/1/749:751, 1/1/782:787 | No text annotation | ||
| J4_7OHU_004 | 1/1/3010:3012, 1/1/3042:3043, 1/1/3098:3100, 1/1/3134:3136 | No text annotation | homologous J4_8C3A_009 NA | |
| J5_7OHU_001 | 1/1/20:22, 1/2/35:42, 1/2/102:107, 1/2/115:116, 1/2/137:139 | No text annotation | homologous J5_8P9A_010 J5_27223.1 | |
| J6_7OHU_001 | 1/1/22:27, 1/1/58:68, 1/1/75:79, 1/1/106:110, 1/1/321:331, 1/2/32:35 | No text annotation | ||
| J7_7OHU_001 | 1/1/949:956, 1/1/965:968, 1/1/1114:1117, 1/1/1141:1146, 1/1/1157:1161, 1/1/1338:1339, 1/1/1365:1370 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7OHU_005 | No text annotation | ||
| J3_7OHU_006 | No text annotation | ||
| J4_7OHU_003 | No text annotation |
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