RNA 3D Hub //

7OHU Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7OHU_0021/1/69:74No text annotation
homologous
HL_8C3A_002
NA
HL_7OHU_0031/1/90:96No text annotation
homologous
HL_8C3A_003
NA
HL_7OHU_0041/1/132:136No text annotation
homologous
HL_5TBW_004
NA
HL_7OHU_0051/1/194:201T-loop with 2 stacked bulged bases
homologous
HL_8C3A_005
NA
HL_7OHU_0061/1/208:212No text annotation
homologous
HL_5TBW_006
NA
HL_7OHU_0071/1/216:224T-loop with unstacked turn
homologous
HL_8C3A_007
NA
HL_7OHU_0081/1/278:287No text annotation
homologous
HL_8C3A_008
NA
HL_7OHU_0101/1/357:362GNRA
homologous
HL_8C3A_010
NA
HL_7OHU_0111/1/382:387GNRA
homologous
HL_8C3A_011
NA
HL_7OHU_0131/1/542:549No text annotation
geometric
HL_4V88_190
NA
HL_7OHU_0141/1/599:604GNRA
homologous
HL_5TBW_013
NA
HL_7OHU_0151/1/640:649No text annotation
HL_7OHU_0161/1/686:694No text annotation
homologous
HL_8C3A_015
NA
HL_7OHU_0171/1/732:737GNRA
homologous
HL_5TBW_017
NA
HL_7OHU_0201/1/958:964Externally structured
homologous
HL_8C3A_022
NA
HL_7OHU_0221/1/1126:1132Externally structured
geometric
HL_8C3A_022
NA
HL_7OHU_0231/1/1148:1155No text annotation
homologous
HL_5TBW_026
NA
HL_7OHU_0241/1/1239:1249No text annotation
homologous
HL_8C3A_027
NA
HL_7OHU_0251/1/1267:1274GNRA wlth tandem sheared
homologous
HL_8C3A_028
NA
HL_7OHU_0261/1/1347:1357No text annotation
homologous
HL_8C3A_029
NA
HL_7OHU_0271/1/1403:1408GNRA
homologous
HL_8C3A_030
NA
HL_7OHU_0311/1/2897:2904No text annotation
homologous
HL_8C3A_063
NA
HL_7OHU_0321/1/3025:3030GNRA
homologous
HL_5TBW_065
NA
HL_7OHU_0331/1/3066:3075No text annotation
geometric
HL_1WZ2_007
HL_75660.5
HL_7OHU_0341/1/3110:3124No text annotation
homologous
HL_8C3A_068
NA
HL_7OHU_0351/1/3194:3197No text annotation
homologous
HL_5TBW_068
NA
HL_7OHU_0361/1/3240:3247No text annotation
homologous
HL_5TBW_069
NA
HL_7OHU_0371/1/3303:3311No text annotation
homologous
HL_8C3A_071
NA
HL_7OHU_0391/2/47:56No text annotation
geometric
HL_6JXM_002
HL_31585.4
HL_7OHU_0401/2/69:89No text annotation
homologous
HL_8P4V_073
NA

Problematic loops

#loop idProblemSequence
HL_7OHU_001No text annotation
HL_7OHU_009No text annotation
HL_7OHU_012Externally structured
HL_7OHU_018No text annotation
HL_7OHU_019No text annotation
HL_7OHU_021No text annotation
HL_7OHU_028Externally structured
HL_7OHU_029No text annotation
HL_7OHU_030No text annotation
HL_7OHU_038Mini UNCG
HL_7OHU_041Externally structured

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7OHU_0011/1/7:8,
1/2/150:152		Single bulged C
homologous
IL_8C3A_002
NA
IL_7OHU_0021/1/13:15,
1/2/144:145		Single bulged U
homologous
IL_8C3A_003
NA
IL_7OHU_0031/1/27:28,
1/1/56:58		No text annotation
homologous
IL_8C3A_004
NA
IL_7OHU_0041/1/82:89,
1/1/97:103		No text annotation
homologous
IL_8C3A_006
NA
IL_7OHU_0051/1/123:124,
1/1/144:149		No text annotation
homologous
IL_5TBW_007
NA
IL_7OHU_0061/1/125:127,
1/1/141:143		Isolated non-canonical cWW pair
homologous
IL_8C3A_008
NA
IL_7OHU_0751/1/169:171,
1/1/247:253		No text annotation
IL_7OHU_0081/1/177:178,
1/1/238:241		Major groove platform
geometric
IL_5J7L_320
IL_48076.6
IL_7OHU_0091/1/189:191,
1/1/204:205		Single bulged U
homologous
IL_8C3A_013
NA
IL_7OHU_0101/1/272:274,
1/1/291:293		Isolated cWH basepair
geometric
IL_4KQ0_002
IL_10167.6
IL_7OHU_0111/1/337:339,
1/2/25:26		Single bulged A
homologous
IL_5TBW_013
NA
IL_7OHU_0121/1/376:379,
1/1/390:403		No text annotation
homologous
IL_8C3A_015
NA
IL_7OHU_0131/1/404:410,
1/2/13:19		Triple sheared with non-canonical cWW
homologous
IL_8C3A_016
NA
IL_7OHU_0141/1/429:431,
1/1/628:630		Isolated non-canonical cWW pair
homologous
IL_5TBW_016
NA
IL_7OHU_0151/1/445:449,
1/1/485:489		Triple non-canonical cWW pairs
geometric
IL_5BTM_001
IL_49751.4
IL_7OHU_0161/1/512:513,
1/1/577:579		Single bulged A
homologous
IL_8C3A_020
NA
IL_7OHU_0171/1/517:525,
1/1/567:573		No text annotation
homologous
IL_5TBW_019
NA
IL_7OHU_0181/1/531:538,
1/1/553:561		No text annotation
homologous
IL_5TBW_020
NA
IL_7OHU_0761/1/668:670,
1/1/792:794		Isolated non-canonical cWW pair
homologous
IL_8CRE_023
IL_87907.2
IL_7OHU_0201/1/680:684,
1/1/696:700		No text annotation
homologous
IL_5TBW_022
NA
IL_7OHU_0211/1/725:728,
1/1/741:745		No text annotation
homologous
IL_8C3A_025
NA
IL_7OHU_0221/1/752:753,
1/1/779:781		Single bulged A
geometric
IL_3MJA_001
NA
IL_7OHU_0231/1/755:757,
1/1/774:777		No text annotation
IL_7OHU_0241/1/803:805,
1/1/938:940		Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_7OHU_0261/1/956:958,
1/1/964:965		Single stack bend
geometric
IL_5J7L_269
IL_26793.1
IL_7OHU_0271/1/969:970,
1/1/1111:1113		No text annotation
homologous
IL_8C3A_038
NA
IL_7OHU_0281/1/975:981,
1/1/1102:1106		No text annotation
IL_7OHU_0291/1/983:985,
1/1/1099:1100		Single bulged G
homologous
IL_8C3A_040
NA
IL_7OHU_0301/1/1120:1122,
1/1/1136:1138		Isolated non-canonical cWW pair
homologous
IL_8C3A_049
NA
IL_7OHU_0311/1/1167:1171,
1/1/1328:1332		UAA/GAN
homologous
IL_8C3A_051
NA
IL_7OHU_0321/1/1173:1180,
1/1/1325:1326		Multiple bulged bases
geometric
IL_1R3E_001
IL_84476.1
IL_7OHU_0331/1/1180:1182,
1/1/1324:1325		Single bulged U
homologous
IL_5TBW_050
NA
IL_7OHU_0341/1/1186:1194,
1/1/1314:1320		No text annotation
IL_7OHU_0361/1/1207:1209,
1/1/1296:1297		Single bulged U
homologous
IL_5TBW_053
NA
IL_7OHU_0371/1/1218:1226,
1/1/1283:1287		Kink-turn
homologous
IL_5TBW_054
NA
IL_7OHU_0381/1/1234:1238,
1/1/1250:1254		No text annotation
homologous
IL_8C3A_058
NA
IL_7OHU_0391/1/1262:1266,
1/1/1275:1277		Major groove platform with extra cWW
homologous
IL_8C3A_059
NA
IL_7OHU_0401/1/1376:1378,
1/1/1428:1431		No text annotation
homologous
IL_8C3A_061
NA
IL_7OHU_0411/1/1385:1387,
1/1/1420:1421		Single bulged A
homologous
IL_8C3A_062
NA
IL_7OHU_0421/1/1388:1395,
1/1/1415:1419		Kink-turn
homologous
IL_5TBW_059
NA
IL_7OHU_0431/1/1398:1400,
1/1/1411:1412		Single bulged A
homologous
IL_5TBW_060
NA
IL_7OHU_0441/1/1444:1450,
1/1/2354:2359		No text annotation
homologous
IL_8C3A_065
NA
IL_7OHU_0771/1/2391:2394,
1/1/2986:2988		Isolated non-canonical cWW pair
geometric
IL_5J7L_009
IL_57744.1
IL_7OHU_0461/1/2834:2839,
1/1/2849:2854		tSH-tHW-tHS-cWW
geometric
IL_6DVK_004
IL_76308.6
IL_7OHU_0471/1/2889:2891,
1/1/2910:2914		No text annotation
IL_7OHU_0481/1/3004:3007,
1/1/3139:3144		Double sheared
homologous
IL_8C3A_123
NA
IL_7OHU_0491/1/3012:3014,
1/1/3040:3042		Isolated non-canonical cWW pair
homologous
IL_5TBW_115
NA
IL_7OHU_0501/1/3018:3025,
1/1/3030:3036		8x7 Sarcin-Ricin; G-bulge
geometric
IL_7A0S_007
IL_04346.10
IL_7OHU_0511/1/3047:3051,
1/1/3091:3094		Major groove minor groove platform with tHH
homologous
IL_8C3A_126
NA
IL_7OHU_0521/1/3053:3059,
1/1/3084:3089		No text annotation
IL_7OHU_0541/1/3164:3166,
1/1/3284:3286		Isolated non-canonical cWW pair
homologous
IL_8C3A_130
NA
IL_7OHU_0551/1/3168:3170,
1/1/3280:3282		Isolated non-canonical cWW pair
homologous
IL_5TBW_122
NA
IL_7OHU_0561/1/3177:3179,
1/1/3210:3211		Single bulged A
geometric
IL_5TBW_123
NA
IL_7OHU_0571/1/3179:3188,
1/1/3204:3210		No text annotation
homologous
IL_5TBW_124
NA
IL_7OHU_0581/1/3193:3194,
1/1/3197:3199		Single bulged U
geometric
IL_5TBW_125
NA
IL_7OHU_0591/1/3225:3229,
1/1/3258:3260		No text annotation
homologous
IL_8C3A_133
NA
IL_7OHU_0601/1/3233:3235,
1/1/3252:3254		Isolated non-canonical cWW pair
homologous
IL_5TBW_127
NA
IL_7OHU_0611/1/3235:3238,
1/1/3249:3252		Tandem non-canonical cWW pairs
geometric
IL_6MWN_005
IL_77658.1
IL_7OHU_0621/1/3300:3303,
1/1/3311:3314		Tandem non-canonical cWW pairs
geometric
IL_7A0S_040
IL_77658.1
IL_7OHU_0631/1/3318:3320,
1/1/3387:3388		Single bulged U
homologous
IL_8C3A_136
NA
IL_7OHU_0641/1/3324:3325,
1/1/3381:3383		Single bulged U
homologous
IL_8C3A_137
NA
IL_7OHU_0661/1/3332:3337,
1/1/3367:3371		No text annotation
homologous
IL_8C3A_139
NA
IL_7OHU_0671/1/3340:3345,
1/1/3360:3364		No text annotation
IL_7OHU_0681/2/64:66,
1/2/93:96		Isolated non-canonical cWW pair
geometric
IL_5TBW_145
NA
IL_7OHU_0691/2/68:69,
1/2/89:91		Single bulged U
geometric
IL_5TBW_146
NA
IL_7OHU_0701/2/120:123,
1/2/129:133		No text annotation

Problematic loops

#loop idProblemSequence
IL_7OHU_007No text annotation
IL_7OHU_019Tandem non-canonical cWW pairs
IL_7OHU_025tHW-tHW cross-strand stack
IL_7OHU_071Isolated cWH basepair
IL_7OHU_072No text annotation
IL_7OHU_035No text annotation
IL_7OHU_045Tandem non-canonical cWW pairs
IL_7OHU_073Isolated near basepair
IL_7OHU_053UAA/GAN
IL_7OHU_065No text annotation
IL_7OHU_074Double sheared

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7OHU_0011/1/113:123,
1/1/149:158,
1/1/263:267		No text annotation
homologous
J3_8P9A_042
J3_19664.1
J3_7OHU_0081/1/113:124,
1/1/144:158,
1/1/263:267		No text annotation
J3_7OHU_0091/1/185:189,
1/1/205:214,
1/1/226:231		No text annotation
homologous
J3_8P9A_044
J3_75408.1
J3_7OHU_0101/1/340:356,
1/1/363:368,
1/2/21:24		No text annotation
homologous
J3_8C3A_047
NA
J3_7OHU_0021/1/369:376,
1/1/403:404,
1/2/19:20		No text annotation
homologous
J3_5TBW_002
NA
J3_7OHU_0111/1/369:379,
1/1/390:404,
1/2/19:20		No text annotation
homologous
J3_8C3A_049
NA
J3_7OHU_0031/1/435:442,
1/1/492:495,
1/1/618:624		No text annotation
J3_7OHU_0041/1/502:503,
1/1/588:597,
1/1/606:611		No text annotation
homologous
J3_5TBW_003
NA
J3_7OHU_0051/1/1230:1232,
1/1/1256:1262,
1/1/1277:1279		No text annotation
homologous
J3_5TBW_007
NA
J3_7OHU_0121/1/3171:3176,
1/1/3212:3220,
1/1/3265:3279		No text annotation
homologous
J3_8P9A_064
J3_03190.1
J3_7OHU_0061/1/3298:3300,
1/1/3314:3318,
1/1/3388:3390		No text annotation
homologous
J3_5TBW_015
NA
J3_7OHU_0071/2/44:45,
1/2/58:64,
1/2/96:100		No text annotation
homologous
J3_8C3A_060
NA
J4_7OHU_0011/1/112:113,
1/1/267:272,
1/1/293:299,
1/1/316:319		No text annotation
homologous
J4_8P9A_012
J4_45801.6
J4_7OHU_0021/1/185:189,
1/1/205:208,
1/1/212:214,
1/1/226:231		No text annotation
homologous
J4_8P9A_013
J4_12410.1
J4_7OHU_0051/1/675:678,
1/1/702:721,
1/1/749:751,
1/1/782:787		No text annotation
J4_7OHU_0041/1/3010:3012,
1/1/3042:3043,
1/1/3098:3100,
1/1/3134:3136		No text annotation
homologous
J4_8C3A_009
NA
J5_7OHU_0011/1/20:22,
1/2/35:42,
1/2/102:107,
1/2/115:116,
1/2/137:139		No text annotation
homologous
J5_8P9A_010
J5_01737.2
J6_7OHU_0011/1/22:27,
1/1/58:68,
1/1/75:79,
1/1/106:110,
1/1/321:331,
1/2/32:35		No text annotation
J7_7OHU_0011/1/949:956,
1/1/965:968,
1/1/1114:1117,
1/1/1141:1146,
1/1/1157:1161,
1/1/1338:1339,
1/1/1365:1370		No text annotation

Problematic loops

#loop idProblemSequence
J4_7OHU_003No text annotation

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