HL_7OHU_027

3D structure

PDB id

7OHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

7OHU|1|1|A|1407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHU_027 not in the Motif Atlas

Homologous match to HL_8C3A_030

Geometric discrepancy: 0.2302

The information below is about HL_8C3A_030

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7OHU|1|1|C|1403
7OHU|1|1|G|1404
7OHU|1|1|U|1405
7OHU|1|1|A|1406
7OHU|1|1|A|1407
7OHU|1|1|G|1408

Current chains

Chain 1

25S rRNA

Nearby chains

Chain e

60S ribosomal protein L32