HL_7OHV_016

3D structure

PDB id

7OHV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

7OHV|1|1|A|709

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHV_016 not in the Motif Atlas

Homologous match to HL_5TBW_016

Geometric discrepancy: 0.4878

The information below is about HL_5TBW_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7OHV|1|1|U|707
7OHV|1|1|G|708
7OHV|1|1|A|709
7OHV|1|1|A|710
7OHV|1|1|A|711
7OHV|1|1|G|712

Current chains

Chain 1

25S rRNA

Nearby chains

Chain A

Ribosome biogenesis protein BRX1

Chain J

rRNA-processing protein EBP2

Chain a

60S ribosomal protein L28