HL_7OHV_050
3D structure
- PDB id
- 7OHV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUGAAUUGCAGAAUUCCGUGAAUC
- Length
- 24 nucleotides
- Bulged bases
- 7OHV|1|2|U|82, 7OHV|1|2|C|84, 7OHV|1|2|U|86, 7OHV|1|2|U|90
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OHV_050 not in the Motif Atlas
- Homologous match to HL_8C3A_075
- Geometric discrepancy: 0.3703
- The information below is about HL_8C3A_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_07882.1
- Basepair signature
- cWW-F-F-tSH-tHS-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7OHV|1|2|G|68
7OHV|1|2|U|69
7OHV|1|2|G|70
7OHV|1|2|A|71
7OHV|1|2|A|72
7OHV|1|2|U|73
7OHV|1|2|U|74
7OHV|1|2|G|75
7OHV|1|2|C|76
7OHV|1|2|A|77
7OHV|1|2|G|78
7OHV|1|2|A|79
7OHV|1|2|A|80
7OHV|1|2|U|81
7OHV|1|2|U|82
7OHV|1|2|C|83
7OHV|1|2|C|84
7OHV|1|2|G|85
7OHV|1|2|U|86
7OHV|1|2|G|87
7OHV|1|2|A|88
7OHV|1|2|A|89
7OHV|1|2|U|90
7OHV|1|2|C|91
Current chains
- Chain 2
- 5.8S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain Y
- 60S ribosomal protein L26-A
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
- Chain v
- Nucleolar protein 16
Coloring options: