HL_7OHW_002

3D structure

PDB id

7OHW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAACCG

Length

6 nucleotides

Bulged bases

7OHW|1|1|C|73

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHW_002 not in the Motif Atlas

Homologous match to HL_8C3A_002

Geometric discrepancy: 0.2258

The information below is about HL_8C3A_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22523.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

7OHW|1|1|C|69
7OHW|1|1|A|70
7OHW|1|1|A|71
7OHW|1|1|C|72
7OHW|1|1|C|73
7OHW|1|1|G|74

Current chains

Chain 1

25S rRNA

Nearby chains

Chain A

Ribosome biogenesis protein BRX1

Chain L

60S ribosomal protein L13-A

Chain N

60S ribosomal protein L15-A