7OHW Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7OHW_002 | 1/1/69:74 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_7OHW_004 | 1/1/132:136 | No text annotation | homologous HL_5TBW_004 NA | |
| HL_7OHW_005 | 1/1/194:201 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_7OHW_006 | 1/1/208:212 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_7OHW_007 | 1/1/216:224 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_7OHW_010 | 1/1/357:362 | GNRA | homologous HL_8C3A_010 NA | |
| HL_7OHW_011 | 1/1/382:387 | No text annotation | geometric HL_5J7L_143 NA | |
| HL_7OHW_012 | 1/1/463:466 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_7OHW_014 | 1/1/599:604 | GNRA | homologous HL_5TBW_013 NA | |
| HL_7OHW_015 | 1/1/640:649 | No text annotation | ||
| HL_7OHW_016 | 1/1/686:694 | No text annotation | homologous HL_8C3A_015 NA | |
| HL_7OHW_022 | 1/1/1148:1155 | No text annotation | homologous HL_5TBW_026 NA | |
| HL_7OHW_025 | 1/1/1347:1357 | No text annotation | homologous HL_8C3A_029 NA | |
| HL_7OHW_026 | 1/1/1403:1408 | GNRA | homologous HL_8C3A_030 NA | |
| HL_7OHW_032 | 1/1/3110:3124 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_7OHW_034 | 1/1/3240:3247 | No text annotation | homologous HL_5TBW_069 NA | |
| HL_7OHW_036 | 1/2/47:56 | tRNA anticodon loop | geometric HL_6JXM_002 HL_97725.1 | |
| HL_7OHW_037 | 1/2/69:89 | No text annotation | geometric HL_3HJW_001 HL_18423.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7OHW_001 | No text annotation | ||
| HL_7OHW_003 | GNRA related | ||
| HL_7OHW_008 | No text annotation | ||
| HL_7OHW_009 | No text annotation | ||
| HL_7OHW_013 | No text annotation | ||
| HL_7OHW_017 | GNRA | ||
| HL_7OHW_018 | No text annotation | ||
| HL_7OHW_019 | No text annotation | ||
| HL_7OHW_020 | No text annotation | ||
| HL_7OHW_021 | No text annotation | ||
| HL_7OHW_023 | No text annotation | ||
| HL_7OHW_024 | GNRA wlth tandem sheared | ||
| HL_7OHW_027 | No text annotation | ||
| HL_7OHW_028 | No text annotation | ||
| HL_7OHW_029 | No text annotation | ||
| HL_7OHW_030 | GNRA | ||
| HL_7OHW_031 | No text annotation | ||
| HL_7OHW_033 | No text annotation | ||
| HL_7OHW_035 | No text annotation | ||
| HL_7OHW_038 | tRNA D-loop | ||
| HL_7OHW_039 | No text annotation | ||
| HL_7OHW_040 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7OHW_001 | 1/1/7:8, 1/2/150:152 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_7OHW_002 | 1/1/13:15, 1/2/144:145 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_7OHW_003 | 1/1/27:28, 1/1/56:58 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_7OHW_004 | 1/1/31:38, 1/1/45:53 | tSH-tHW-tHH-tHS | geometric IL_5TBW_005 NA | |
| IL_7OHW_005 | 1/1/82:89, 1/1/97:103 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_7OHW_006 | 1/1/123:124, 1/1/144:149 | No text annotation | homologous IL_8C3A_007 NA | |
| IL_7OHW_007 | 1/1/125:127, 1/1/141:143 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_7OHW_008 | 1/1/164:166, 1/1/256:257 | Single bulged A | geometric IL_7A0S_016 IL_14190.2 | |
| IL_7OHW_009 | 1/1/169:170, 1/1/248:253 | No text annotation | ||
| IL_7OHW_067 | 1/1/177:178, 1/1/238:241 | No text annotation | geometric IL_5TBW_501 NA | |
| IL_7OHW_011 | 1/1/189:191, 1/1/204:205 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_7OHW_012 | 1/1/337:339, 1/2/25:26 | Single bulged A | homologous IL_5TBW_013 NA | |
| IL_7OHW_013 | 1/1/376:379, 1/1/390:403 | No text annotation | homologous IL_8C3A_015 NA | |
| IL_7OHW_014 | 1/1/404:410, 1/2/13:19 | Triple sheared with non-canonical cWW | homologous IL_8C3A_016 NA | |
| IL_7OHW_015 | 1/1/429:432, 1/1/627:630 | Tandem non-canonical cWW pairs | geometric IL_3WBM_003 IL_15225.2 | |
| IL_7OHW_016 | 1/1/445:449, 1/1/485:489 | Triple non-canonical cWW pairs | geometric IL_5BTM_001 IL_71154.3 | |
| IL_7OHW_017 | 1/1/452:454, 1/1/476:482 | No text annotation | ||
| IL_7OHW_018 | 1/1/462:463, 1/1/466:468 | No text annotation | ||
| IL_7OHW_019 | 1/1/512:513, 1/1/577:579 | Single bulged A | homologous IL_8C3A_020 NA | |
| IL_7OHW_020 | 1/1/517:525, 1/1/567:573 | No text annotation | homologous IL_5TBW_019 NA | |
| IL_7OHW_021 | 1/1/531:538, 1/1/553:561 | No text annotation | homologous IL_5TBW_020 NA | |
| IL_7OHW_022 | 1/1/668:670, 1/1/792:794 | Isolated non-canonical cWW pair | homologous IL_8C3A_023 NA | |
| IL_7OHW_023 | 1/1/680:684, 1/1/696:700 | No text annotation | homologous IL_5TBW_022 NA | |
| IL_7OHW_024 | 1/1/725:728, 1/1/741:745 | No text annotation | homologous IL_8C3A_025 NA | |
| IL_7OHW_026 | 1/1/803:805, 1/1/938:940 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_7OHW_027 | 1/1/805:809, 1/1/931:938 | No text annotation | ||
| IL_7OHW_028 | 1/1/969:970, 1/1/1111:1113 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_7OHW_029 | 1/1/975:982, 1/1/1101:1106 | No text annotation | ||
| IL_7OHW_030 | 1/1/983:985, 1/1/1099:1100 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_7OHW_032 | 1/1/1167:1171, 1/1/1328:1332 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_7OHW_033 | 1/1/1173:1182, 1/1/1324:1326 | No text annotation | ||
| IL_7OHW_034 | 1/1/1186:1194, 1/1/1314:1320 | No text annotation | ||
| IL_7OHW_036 | 1/1/1207:1209, 1/1/1296:1297 | Single bulged U | homologous IL_5TBW_053 NA | |
| IL_7OHW_037 | 1/1/1218:1226, 1/1/1283:1287 | Kink-turn | homologous IL_5TBW_054 NA | |
| IL_7OHW_040 | 1/1/1376:1378, 1/1/1428:1431 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_7OHW_041 | 1/1/1385:1387, 1/1/1420:1421 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_7OHW_042 | 1/1/1388:1395, 1/1/1415:1419 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_7OHW_043 | 1/1/1398:1400, 1/1/1411:1412 | Single bulged A | geometric IL_5WWT_001 IL_14190.2 | |
| IL_7OHW_044 | 1/1/1444:1450, 1/1/2354:2359 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_7OHW_046 | 1/1/3004:3007, 1/1/3139:3144 | Double sheared | homologous IL_8C3A_123 NA | |
| IL_7OHW_052 | 1/1/3103:3107, 1/1/3127:3131 | UAA/GAN | homologous IL_8C3A_129 NA | |
| IL_7OHW_053 | 1/1/3177:3179, 1/1/3210:3211 | Single bulged A | geometric IL_5TBW_123 NA | |
| IL_7OHW_054 | 1/1/3179:3188, 1/1/3204:3210 | No text annotation | homologous IL_5TBW_124 NA | |
| IL_7OHW_056 | 1/1/3225:3229, 1/1/3258:3260 | No text annotation | homologous IL_8C3A_133 NA | |
| IL_7OHW_058 | 1/1/3235:3238, 1/1/3249:3252 | Tandem non-canonical cWW pairs | geometric IL_4EYA_003 IL_71194.2 | |
| IL_7OHW_063 | 1/2/64:66, 1/2/93:96 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA | |
| IL_7OHW_064 | 1/2/68:69, 1/2/89:91 | Single bulged U | homologous IL_5TBW_146 NA | |
| IL_7OHW_065 | 1/6/26:27, 1/6/51:54 | Multiple bulged bases | geometric IL_4V88_392 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7OHW_010 | 8-nt loop receptor | ||
| IL_7OHW_068 | Isolated cWH basepair | ||
| IL_7OHW_025 | No text annotation | ||
| IL_7OHW_069 | Isolated cWH basepair | ||
| IL_7OHW_031 | Isolated non-canonical cWW pair | ||
| IL_7OHW_070 | No text annotation | ||
| IL_7OHW_035 | No text annotation | ||
| IL_7OHW_071 | No text annotation | ||
| IL_7OHW_038 | No text annotation | ||
| IL_7OHW_039 | Major groove platform with extra cWW | ||
| IL_7OHW_045 | No text annotation | ||
| IL_7OHW_072 | No text annotation | ||
| IL_7OHW_074 | Double sheared with non-canonical cWW | ||
| IL_7OHW_047 | Isolated non-canonical cWW pair | ||
| IL_7OHW_048 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_7OHW_049 | Major groove minor groove platform with tHH | ||
| IL_7OHW_073 | Isolated near basepair | ||
| IL_7OHW_050 | No text annotation | ||
| IL_7OHW_075 | No text annotation | ||
| IL_7OHW_051 | No text annotation | ||
| IL_7OHW_055 | Single bulged U | ||
| IL_7OHW_057 | Isolated non-canonical cWW pair | ||
| IL_7OHW_059 | Single bulged U | ||
| IL_7OHW_060 | No text annotation | ||
| IL_7OHW_061 | Isolated non-canonical cWW with bulges | ||
| IL_7OHW_062 | No text annotation | ||
| IL_7OHW_066 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7OHW_001 | 1/1/113:123, 1/1/149:158, 1/1/263:267 | No text annotation | homologous J3_8P9A_042 J3_69230.1 | |
| J3_7OHW_007 | 1/1/113:124, 1/1/144:158, 1/1/263:267 | No text annotation | ||
| J3_7OHW_008 | 1/1/340:356, 1/1/363:368, 1/2/21:24 | No text annotation | homologous J3_8C3A_047 NA | |
| J3_7OHW_002 | 1/1/369:376, 1/1/403:404, 1/2/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_7OHW_009 | 1/1/369:379, 1/1/390:404, 1/2/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_7OHW_010 | 1/1/436:442, 1/1/492:495, 1/1/618:623 | No text annotation | ||
| J3_7OHW_003 | 1/1/502:503, 1/1/588:597, 1/1/606:611 | No text annotation | homologous J3_5TBW_003 NA | |
| J3_7OHW_006 | 1/2/44:45, 1/2/58:64, 1/2/96:100 | No text annotation | homologous J3_8C3A_060 NA | |
| J4_7OHW_001 | 1/1/112:113, 1/1/267:272, 1/1/293:299, 1/1/316:319 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
| J4_7OHW_002 | 1/1/185:189, 1/1/205:208, 1/1/212:214, 1/1/226:231 | No text annotation | homologous J4_8P9A_013 J4_43318.1 | |
| J4_7OHW_003 | 1/1/3010:3012, 1/1/3042:3043, 1/1/3098:3100, 1/1/3134:3136 | No text annotation | homologous J4_8P9A_020 J4_37757.1 | |
| J5_7OHW_001 | 1/1/20:22, 1/2/35:42, 1/2/102:107, 1/2/115:116, 1/2/137:139 | No text annotation | homologous J5_8P9A_010 J5_27223.1 | |
| J5_7OHW_002 | 1/1/658:663, 1/1/799:802, 1/1/941:944, 1/1/1375:1376, 1/1/1431:1437 | No text annotation | ||
| J6_7OHW_001 | 1/1/22:27, 1/1/58:68, 1/1/75:79, 1/1/106:110, 1/1/321:331, 1/2/32:35 | No text annotation | ||
| J6_7OHW_003 | 1/1/949:968, 1/1/1114:1117, 1/1/1141:1146, 1/1/1157:1161, 1/1/1338:1339, 1/1/1365:1370 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7OHW_004 | No text annotation | ||
| J3_7OHW_005 | No text annotation | ||
| J6_7OHW_002 | No text annotation |
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