HL_7OHW_008

3D structure

PDB id

7OHW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUUGGGAAUG

Length

10 nucleotides

Bulged bases

7OHW|1|1|A|285

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHW_008 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3147

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

7OHW|1|1|U|278
7OHW|1|1|U|279
7OHW|1|1|U|280
7OHW|1|1|G|281
7OHW|1|1|G|282
7OHW|1|1|G|283
7OHW|1|1|A|284
7OHW|1|1|A|285
7OHW|1|1|U|286
7OHW|1|1|G|287

Current chains

Chain 1

25S rRNA

Nearby chains

Chain A

Ribosome biogenesis protein BRX1

Chain N

60S ribosomal protein L15-A