HL_7OHW_013

3D structure

PDB id

7OHW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCCUCGGU

Length

8 nucleotides

Bulged bases

7OHW|1|1|C|544, 7OHW|1|1|U|545, 7OHW|1|1|C|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHW_013 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.2437

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7OHW|1|1|G|542
7OHW|1|1|C|543
7OHW|1|1|C|544
7OHW|1|1|U|545
7OHW|1|1|C|546
7OHW|1|1|G|547
7OHW|1|1|G|548
7OHW|1|1|U|549

Current chains

Chain 1

25S rRNA

Nearby chains

Chain H

60S ribosomal protein L9-A