HL_7OHW_019

3D structure

PDB id

7OHW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

7OHW|1|1|A|817, 7OHW|1|1|A|925

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHW_019 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2074

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

7OHW|1|1|U|814
7OHW|1|1|G|815
7OHW|1|1|A|816
7OHW|1|1|A|817
7OHW|1|1|A|925
7OHW|1|1|A|926

Current chains

Chain 1

25S rRNA

Nearby chains

Chain j

60S ribosomal protein L37-A