HL_7OHW_026

3D structure

PDB id

7OHW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

7OHW|1|1|U|1405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHW_026 not in the Motif Atlas

Homologous match to HL_8C3A_030

Geometric discrepancy: 0.173

The information below is about HL_8C3A_030

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7OHW|1|1|C|1403
7OHW|1|1|G|1404
7OHW|1|1|U|1405
7OHW|1|1|A|1406
7OHW|1|1|A|1407
7OHW|1|1|G|1408

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 3

Protein MAK16

Chain e

60S ribosomal protein L32