HL_7OHW_038
3D structure
- PDB id
- 7OHW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL25 expression shut down, population B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CACG
- Length
- 4 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OHW_038 not in the Motif Atlas
- Geometric match to HL_4V9K_033
- Geometric discrepancy: 0.2226
- The information below is about HL_4V9K_033
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_48417.5
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 26
Unit IDs
7OHW|1|2|C|108
7OHW|1|2|A|109
7OHW|1|2|C|110
7OHW|1|2|G|114
Current chains
- Chain 2
- 5.8S rRNA
Nearby chains
- Chain j
- 60S ribosomal protein L37-A
Coloring options: