HL_7OHX_009

3D structure

PDB id

7OHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUUCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHX_009 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3803

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

7OHX|1|1|G|303
7OHX|1|1|G|304
7OHX|1|1|U|305
7OHX|1|1|U|310
7OHX|1|1|C|311
7OHX|1|1|C|312

Current chains

Chain 1

25S rRNA

Nearby chains

Chain D

ATP-dependent RNA helicase HAS1

Chain N

60S ribosomal protein L15-A