7OHX Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7OHX_002 | 1/1/69:74 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_7OHX_004 | 1/1/132:136 | No text annotation | homologous HL_5TBW_004 NA | |
| HL_7OHX_005 | 1/1/194:201 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_7OHX_006 | 1/1/208:212 | No text annotation | homologous HL_5TBW_006 NA | |
| HL_7OHX_007 | 1/1/216:224 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_7OHX_010 | 1/1/357:362 | GNRA | homologous HL_8C3A_010 NA | |
| HL_7OHX_012 | 1/1/462:468 | No text annotation | ||
| HL_7OHX_015 | 1/1/640:649 | No text annotation | geometric HL_8C3A_015 NA | |
| HL_7OHX_042 | 1/1/687:693 | No text annotation | geometric HL_2ZZM_002 HL_33487.1 | |
| HL_7OHX_022 | 1/1/1148:1155 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_7OHX_025 | 1/1/1347:1357 | No text annotation | homologous HL_8C3A_029 NA | |
| HL_7OHX_026 | 1/1/1403:1408 | GNRA | homologous HL_8C3A_030 NA | |
| HL_7OHX_034 | 1/1/3240:3247 | No text annotation | homologous HL_5TBW_069 NA | |
| HL_7OHX_036 | 1/2/47:56 | tRNA anticodon loop | geometric HL_6JXM_002 HL_97725.1 | |
| HL_7OHX_037 | 1/2/69:89 | No text annotation | homologous HL_8P4V_073 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7OHX_001 | No text annotation | ||
| HL_7OHX_003 | UNCG variation | ||
| HL_7OHX_008 | No text annotation | ||
| HL_7OHX_009 | No text annotation | ||
| HL_7OHX_011 | GNRA | ||
| HL_7OHX_013 | No text annotation | ||
| HL_7OHX_014 | GNRA | ||
| HL_7OHX_016 | No text annotation | ||
| HL_7OHX_017 | GNRA | ||
| HL_7OHX_018 | No text annotation | ||
| HL_7OHX_019 | No text annotation | ||
| HL_7OHX_020 | No text annotation | ||
| HL_7OHX_021 | No text annotation | ||
| HL_7OHX_023 | No text annotation | ||
| HL_7OHX_024 | GNRA wlth tandem sheared | ||
| HL_7OHX_027 | Externally structured | ||
| HL_7OHX_028 | Mini UNCG | ||
| HL_7OHX_029 | No text annotation | ||
| HL_7OHX_030 | GNRA related | ||
| HL_7OHX_031 | No text annotation | ||
| HL_7OHX_032 | No text annotation | ||
| HL_7OHX_033 | No text annotation | ||
| HL_7OHX_035 | No text annotation | ||
| HL_7OHX_038 | No text annotation | ||
| HL_7OHX_039 | Externally structured | ||
| HL_7OHX_040 | Mini UNCG | ||
| HL_7OHX_041 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7OHX_001 | 1/1/13:15, 1/2/144:145 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_7OHX_002 | 1/1/27:28, 1/1/56:58 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_7OHX_003 | 1/1/82:89, 1/1/97:103 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_7OHX_004 | 1/1/123:124, 1/1/144:149 | No text annotation | geometric IL_5TBW_007 NA | |
| IL_7OHX_005 | 1/1/125:127, 1/1/141:143 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_7OHX_006 | 1/1/169:170, 1/1/248:253 | No text annotation | ||
| IL_7OHX_008 | 1/1/189:191, 1/1/204:205 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_7OHX_009 | 1/1/337:339, 1/2/25:26 | Single bulged A | homologous IL_5TBW_013 NA | |
| IL_7OHX_010 | 1/1/376:379, 1/1/390:403 | No text annotation | homologous IL_5TBW_014 NA | |
| IL_7OHX_011 | 1/1/404:410, 1/2/13:19 | Triple sheared with non-canonical cWW | homologous IL_8C3A_016 NA | |
| IL_7OHX_012 | 1/1/429:431, 1/1/628:630 | Isolated non-canonical cWW pair | homologous IL_5TBW_016 NA | |
| IL_7OHX_013 | 1/1/445:449, 1/1/485:489 | No text annotation | geometric IL_4V88_422 NA | |
| IL_7OHX_015 | 1/1/512:513, 1/1/577:579 | Single bulged A | homologous IL_8C3A_020 NA | |
| IL_7OHX_016 | 1/1/517:525, 1/1/567:573 | No text annotation | homologous IL_5TBW_019 NA | |
| IL_7OHX_017 | 1/1/531:538, 1/1/553:561 | No text annotation | homologous IL_5TBW_020 NA | |
| IL_7OHX_018 | 1/1/668:670, 1/1/792:794 | Isolated non-canonical cWW pair | homologous IL_8C3A_023 NA | |
| IL_7OHX_019 | 1/1/680:684, 1/1/696:700 | No text annotation | homologous IL_5TBW_022 NA | |
| IL_7OHX_020 | 1/1/725:728, 1/1/741:745 | No text annotation | homologous IL_8C3A_025 NA | |
| IL_7OHX_022 | 1/1/803:805, 1/1/938:940 | Isolated non-canonical cWW pair | geometric IL_1UN6_005 IL_01003.3 | |
| IL_7OHX_024 | 1/1/969:970, 1/1/1111:1113 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_7OHX_026 | 1/1/975:981, 1/1/1102:1106 | No text annotation | ||
| IL_7OHX_027 | 1/1/983:985, 1/1/1099:1100 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_7OHX_030 | 1/1/1167:1171, 1/1/1328:1332 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_7OHX_031 | 1/1/1173:1180, 1/1/1325:1326 | SSU/LSU pseudoknot | homologous IL_5TBW_049 NA | |
| IL_7OHX_032 | 1/1/1180:1182, 1/1/1324:1325 | Single bulged U | geometric IL_5TBW_050 NA | |
| IL_7OHX_036 | 1/1/1376:1378, 1/1/1428:1431 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_7OHX_037 | 1/1/1385:1387, 1/1/1420:1421 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_7OHX_038 | 1/1/1388:1395, 1/1/1415:1419 | Kink-turn | homologous IL_5TBW_059 NA | |
| IL_7OHX_039 | 1/1/1398:1400, 1/1/1411:1412 | Single bulged A | geometric IL_5WWT_001 IL_14190.2 | |
| IL_7OHX_040 | 1/1/1444:1450, 1/1/2354:2359 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_7OHX_049 | 1/1/3177:3179, 1/1/3210:3211 | Single bulged A | homologous IL_5TBW_123 NA | |
| IL_7OHX_050 | 1/1/3179:3188, 1/1/3204:3210 | No text annotation | geometric IL_5TBW_124 NA | |
| IL_7OHX_052 | 1/1/3225:3229, 1/1/3258:3260 | No text annotation | homologous IL_8C3A_133 NA | |
| IL_7OHX_060 | 1/2/64:66, 1/2/93:96 | Isolated non-canonical cWW pair | geometric IL_5TBW_145 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7OHX_064 | No text annotation | ||
| IL_7OHX_007 | No text annotation | ||
| IL_7OHX_065 | Isolated cWH basepair | ||
| IL_7OHX_014 | No text annotation | ||
| IL_7OHX_021 | No text annotation | ||
| IL_7OHX_023 | No text annotation | ||
| IL_7OHX_025 | Isolated non-canonical cWW pair | ||
| IL_7OHX_028 | No text annotation | ||
| IL_7OHX_029 | No text annotation | ||
| IL_7OHX_033 | No text annotation | ||
| IL_7OHX_034 | No text annotation | ||
| IL_7OHX_035 | No text annotation | ||
| IL_7OHX_041 | Double sheared | ||
| IL_7OHX_042 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_7OHX_043 | Major groove minor groove platform with tHH | ||
| IL_7OHX_066 | Isolated non-canonical cWW pair | ||
| IL_7OHX_044 | No text annotation | ||
| IL_7OHX_045 | No text annotation | ||
| IL_7OHX_046 | No text annotation | ||
| IL_7OHX_047 | UAA/GAN | ||
| IL_7OHX_048 | Isolated cWS basepair | ||
| IL_7OHX_051 | Single bulged U | ||
| IL_7OHX_053 | Isolated non-canonical cWW pair | ||
| IL_7OHX_054 | Tandem non-canonical cWW pairs | ||
| IL_7OHX_067 | Isolated non-canonical cWW pair | ||
| IL_7OHX_055 | Tandem non-canonical cWW pairs | ||
| IL_7OHX_056 | No text annotation | ||
| IL_7OHX_068 | Isolated non-canonical cWW pair | ||
| IL_7OHX_057 | No text annotation | ||
| IL_7OHX_058 | No text annotation | ||
| IL_7OHX_059 | No text annotation | ||
| IL_7OHX_069 | No text annotation | ||
| IL_7OHX_061 | Single bulged U | ||
| IL_7OHX_070 | No text annotation | ||
| IL_7OHX_062 | Multiple bulged bases | ||
| IL_7OHX_063 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7OHX_001 | 1/1/113:123, 1/1/149:158, 1/1/263:267 | No text annotation | homologous J3_8P9A_042 J3_69230.1 | |
| J3_7OHX_007 | 1/1/113:124, 1/1/144:158, 1/1/263:267 | No text annotation | ||
| J3_7OHX_002 | 1/1/369:376, 1/1/403:404, 1/2/19:20 | No text annotation | homologous J3_5TBW_002 NA | |
| J3_7OHX_008 | 1/1/436:442, 1/1/492:495, 1/1/618:623 | No text annotation | ||
| J3_7OHX_003 | 1/1/502:503, 1/1/588:597, 1/1/606:611 | No text annotation | homologous J3_5TBW_003 NA | |
| J3_7OHX_006 | 1/2/44:45, 1/2/58:64, 1/2/96:100 | No text annotation | homologous J3_8C3A_060 NA | |
| J4_7OHX_001 | 1/1/112:113, 1/1/267:272, 1/1/293:299, 1/1/316:319 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
| J4_7OHX_002 | 1/1/185:189, 1/1/205:208, 1/1/212:214, 1/1/226:231 | No text annotation | homologous J4_8P9A_013 J4_43318.1 | |
| J4_7OHX_003 | 1/1/3010:3014, 1/1/3040:3043, 1/1/3098:3100, 1/1/3134:3136 | No text annotation | ||
| J5_7OHX_001 | 1/1/20:22, 1/2/35:42, 1/2/102:108, 1/2/114:116, 1/2/137:139 | No text annotation | ||
| J5_7OHX_002 | 1/1/658:663, 1/1/799:802, 1/1/941:944, 1/1/1375:1376, 1/1/1431:1437 | No text annotation | homologous J5_8C3A_002 NA | |
| J6_7OHX_001 | 1/1/22:27, 1/1/58:68, 1/1/75:79, 1/1/106:110, 1/1/321:331, 1/2/32:35 | No text annotation | ||
| J6_7OHX_002 | 1/1/949:968, 1/1/1114:1117, 1/1/1141:1146, 1/1/1157:1161, 1/1/1338:1339, 1/1/1365:1370 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7OHX_004 | No text annotation | ||
| J3_7OHX_005 | No text annotation |
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