HL_7OHX_028

3D structure

PDB id

7OHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGGGC

Length

5 nucleotides

Bulged bases

7OHX|1|1|G|2375, 7OHX|1|1|G|2376

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHX_028 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.2154

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

7OHX|1|1|G|2369
7OHX|1|1|G|2370
7OHX|1|1|G|2375
7OHX|1|1|G|2376
7OHX|1|1|C|2378

Current chains

Chain 1

25S rRNA

Nearby chains