HL_7OHX_029

3D structure

PDB id

7OHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCGAAGCAGAAG

Length

12 nucleotides

Bulged bases

7OHX|1|1|G|2898

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHX_029 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.1403

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

7OHX|1|1|C|2893
7OHX|1|1|C|2894
7OHX|1|1|G|2895
7OHX|1|1|A|2896
7OHX|1|1|A|2897
7OHX|1|1|G|2898
7OHX|1|1|C|2899
7OHX|1|1|A|2900
7OHX|1|1|G|2901
7OHX|1|1|A|2902
7OHX|1|1|A|2903
7OHX|1|1|G|2908

Current chains

Chain 1

25S rRNA

Nearby chains

Chain H

60S ribosomal protein L9-A

Chain b

Nucleolar GTP-binding protein 1