HL_7OHY_011

3D structure

PDB id

7OHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OHY_011 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.287

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7OHY|1|1|U|382
7OHY|1|1|G|383
7OHY|1|1|A|384
7OHY|1|1|A|385
7OHY|1|1|A|386
7OHY|1|1|A|387

Current chains

Chain 1

25S rRNA

Nearby chains

Chain P

60S ribosomal protein L17-A