RNA 3D Hub //

7OHY Hairpin, Internal, and multi-helix Junction Loop Motifs

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Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7OHY_0021/1/69:74No text annotation
homologous
HL_8C3A_002
NA
HL_7OHY_0031/1/90:96No text annotation
homologous
HL_5TBW_003
NA
HL_7OHY_0041/1/132:136No text annotation
homologous
HL_5TBW_004
NA
HL_7OHY_0051/1/194:201T-loop with 2 stacked bulged bases
homologous
HL_8C3A_005
NA
HL_7OHY_0061/1/208:212No text annotation
homologous
HL_5TBW_006
NA
HL_7OHY_0071/1/216:224T-loop with unstacked turn
homologous
HL_8C3A_007
NA
HL_7OHY_0081/1/278:287No text annotation
homologous
HL_8C3A_008
NA
HL_7OHY_0101/1/357:362GNRA
homologous
HL_8C3A_010
NA
HL_7OHY_0111/1/382:387No text annotation
geometric
HL_4V9F_003
HL_75660.5
HL_7OHY_0131/1/541:550No text annotation
homologous
HL_8P9A_124
NA
HL_7OHY_0141/1/599:604GNRA
homologous
HL_5TBW_013
NA
HL_7OHY_0151/1/640:649No text annotation
HL_7OHY_0161/1/686:694No text annotation
homologous
HL_8C3A_015
NA
HL_7OHY_0181/1/732:737GNRA
homologous
HL_5TBW_017
NA
HL_7OHY_0211/1/958:964Externally structured
homologous
HL_8C3A_022
NA
HL_7OHY_0231/1/1126:1132Other HL
geometric
HL_4V9F_039
HL_77436.5
HL_7OHY_0241/1/1148:1155No text annotation
homologous
HL_8C3A_026
NA
HL_7OHY_0251/1/1239:1249No text annotation
homologous
HL_8C3A_027
NA
HL_7OHY_0261/1/1267:1274GNRA wlth tandem sheared
homologous
HL_8C3A_028
NA
HL_7OHY_0281/1/1403:1408GNRA
homologous
HL_8C3A_030
NA
HL_7OHY_0321/1/2897:2904No text annotation
homologous
HL_8C3A_063
NA
HL_7OHY_0331/1/3025:3030GNRA related
geometric
HL_3OXE_002
HL_04783.2
HL_7OHY_0341/1/3064:3077No text annotation
HL_7OHY_0351/1/3110:3124No text annotation
homologous
HL_8C3A_068
NA
HL_7OHY_0361/1/3194:3197Mini UNCG
geometric
HL_4V88_192
NA
HL_7OHY_0371/1/3240:3247No text annotation
homologous
HL_5TBW_069
NA
HL_7OHY_0381/1/3303:3311No text annotation
homologous
HL_5TBW_070
NA
HL_7OHY_0391/1/3350:3353No text annotation
geometric
HL_5TBW_068
NA
HL_7OHY_0401/2/47:56No text annotation
geometric
HL_6JXM_002
HL_31585.4
HL_7OHY_0411/2/69:89No text annotation
homologous
HL_8P4V_073
NA

Problematic loops

#loop idProblemSequence
HL_7OHY_001No text annotation
HL_7OHY_009No text annotation
HL_7OHY_012No text annotation
HL_7OHY_017No text annotation
HL_7OHY_019No text annotation
HL_7OHY_020No text annotation
HL_7OHY_022No text annotation
HL_7OHY_027No text annotation
HL_7OHY_029Externally structured
HL_7OHY_030No text annotation
HL_7OHY_031No text annotation
HL_7OHY_042No text annotation
HL_7OHY_043No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7OHY_0011/1/7:8,
1/2/150:152		Single bulged C
homologous
IL_8C3A_002
NA
IL_7OHY_0021/1/13:15,
1/2/144:145		Single bulged U
homologous
IL_8C3A_003
NA
IL_7OHY_0031/1/27:28,
1/1/56:58		No text annotation
homologous
IL_8C3A_004
NA
IL_7OHY_0041/1/82:89,
1/1/97:103		No text annotation
homologous
IL_8C3A_006
NA
IL_7OHY_0051/1/123:124,
1/1/144:149		No text annotation
geometric
IL_5TBW_007
NA
IL_7OHY_0061/1/125:127,
1/1/141:143		Isolated non-canonical cWW pair
homologous
IL_8C3A_008
NA
IL_7OHY_0751/1/167:170,
1/1/248:255		No text annotation
IL_7OHY_0081/1/177:178,
1/1/238:241		No text annotation
geometric
IL_5TBW_501
NA
IL_7OHY_0091/1/189:191,
1/1/204:205		Single bulged U
homologous
IL_8C3A_013
NA
IL_7OHY_0101/1/272:274,
1/1/291:293		Isolated non-canonical cWW pair
geometric
IL_4WF9_020
IL_87907.2
IL_7OHY_0111/1/337:339,
1/2/25:26		Single bulged A
homologous
IL_5TBW_013
NA
IL_7OHY_0121/1/376:379,
1/1/390:403		No text annotation
geometric
IL_5TBW_014
NA
IL_7OHY_0761/1/404:410,
1/2/13:19		No text annotation
homologous
IL_8P9A_244
IL_04021.2
IL_7OHY_0141/1/429:431,
1/1/628:630		Isolated non-canonical cWW pair
homologous
IL_5TBW_016
NA
IL_7OHY_0151/1/445:449,
1/1/485:489		Triple non-canonical cWW pairs
geometric
IL_8SP9_002
IL_49751.4
IL_7OHY_0161/1/452:455,
1/1/475:482		No text annotation
IL_7OHY_0171/1/512:513,
1/1/577:579		Single bulged A
homologous
IL_8C3A_020
NA
IL_7OHY_0181/1/517:525,
1/1/567:573		No text annotation
homologous
IL_5TBW_019
NA
IL_7OHY_0191/1/531:538,
1/1/553:561		No text annotation
homologous
IL_5TBW_020
NA
IL_7OHY_0201/1/668:670,
1/1/792:794		Isolated non-canonical cWW pair
homologous
IL_8C3A_023
NA
IL_7OHY_0211/1/680:684,
1/1/696:700		No text annotation
homologous
IL_5TBW_022
NA
IL_7OHY_0221/1/725:728,
1/1/741:745		No text annotation
homologous
IL_8C3A_025
NA
IL_7OHY_0771/1/753:756,
1/1/775:779		No text annotation
IL_7OHY_0241/1/803:805,
1/1/938:940		Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_7OHY_0261/1/956:958,
1/1/964:965		Single stack bend
geometric
IL_4LFB_041
IL_90729.1
IL_7OHY_0271/1/969:970,
1/1/1111:1113		No text annotation
homologous
IL_8C3A_038
NA
IL_7OHY_0781/1/975:981,
1/1/1102:1106		No text annotation
IL_7OHY_0291/1/983:985,
1/1/1099:1100		Single bulged G
homologous
IL_8C3A_040
NA
IL_7OHY_0311/1/1120:1123,
1/1/1135:1138		Tandem non-canonical cWW pairs
geometric
IL_5C5W_001
IL_77658.1
IL_7OHY_0701/1/1120:1125,
1/1/1133:1138		No text annotation
IL_7OHY_0321/1/1167:1171,
1/1/1328:1332		UAA/GAN
homologous
IL_8C3A_051
NA
IL_7OHY_0331/1/1173:1182,
1/1/1324:1326		Isolated non-canonical cWW pair
geometric
IL_4M4O_001
IL_87907.2
IL_7OHY_0341/1/1186:1194,
1/1/1314:1320		No text annotation
IL_7OHY_0361/1/1207:1209,
1/1/1296:1297		Single bulged U
homologous
IL_5TBW_053
NA
IL_7OHY_0371/1/1218:1226,
1/1/1283:1287		No text annotation
IL_7OHY_0381/1/1234:1238,
1/1/1250:1254		No text annotation
homologous
IL_8C3A_058
NA
IL_7OHY_0391/1/1262:1266,
1/1/1275:1277		Major groove platform with extra cWW
homologous
IL_8C3A_059
NA
IL_7OHY_0401/1/1376:1378,
1/1/1428:1431		No text annotation
homologous
IL_8C3A_061
NA
IL_7OHY_0411/1/1385:1387,
1/1/1420:1421		Single bulged A
homologous
IL_8C3A_062
NA
IL_7OHY_0421/1/1388:1395,
1/1/1415:1419		Kink-turn
geometric
IL_3V7E_002
IL_70923.9
IL_7OHY_0431/1/1398:1400,
1/1/1411:1412		Single bulged A
geometric
IL_7RQB_033
NA
IL_7OHY_0441/1/1444:1450,
1/1/2354:2359		No text annotation
homologous
IL_8C3A_065
NA
IL_7OHY_0711/1/2389:2391,
1/1/2988:2990		Isolated cWH basepair
geometric
IL_4V88_405
NA
IL_7OHY_0451/1/3004:3007,
1/1/3139:3144		Double sheared
homologous
IL_8C3A_123
NA
IL_7OHY_0461/1/3012:3014,
1/1/3040:3042		Isolated non-canonical cWW pair
homologous
IL_5TBW_115
NA
IL_7OHY_0471/1/3018:3025,
1/1/3030:3036		8x7 Sarcin-Ricin; G-bulge
homologous
IL_8C3A_125
NA
IL_7OHY_0481/1/3047:3051,
1/1/3091:3094		Major groove minor groove platform with tHH
homologous
IL_8C3A_126
NA
IL_7OHY_0721/1/3047:3059,
1/1/3084:3094		No text annotation
IL_7OHY_0491/1/3051:3059,
1/1/3084:3091		No text annotation
IL_7OHY_0501/1/3103:3107,
1/1/3127:3131		UAA/GAN
homologous
IL_5TBW_120
NA
IL_7OHY_0511/1/3164:3166,
1/1/3284:3286		Isolated non-canonical cWW pair
homologous
IL_8C3A_130
NA
IL_7OHY_0521/1/3168:3170,
1/1/3280:3282		Isolated non-canonical cWW pair
homologous
IL_5TBW_122
NA
IL_7OHY_0531/1/3177:3179,
1/1/3210:3211		Single bulged A
homologous
IL_5TBW_123
NA
IL_7OHY_0541/1/3179:3188,
1/1/3204:3210		No text annotation
geometric
IL_5TBW_124
NA
IL_7OHY_0551/1/3193:3194,
1/1/3197:3199		Single bulged U
homologous
IL_5TBW_125
NA
IL_7OHY_0561/1/3225:3229,
1/1/3258:3260		No text annotation
homologous
IL_8C3A_133
NA
IL_7OHY_0571/1/3233:3235,
1/1/3252:3254		Isolated non-canonical cWW pair
geometric
IL_5TBW_042
NA
IL_7OHY_0581/1/3235:3238,
1/1/3249:3252		Tandem non-canonical cWW pairs
homologous
IL_5TBW_128
NA
IL_7OHY_0591/1/3300:3303,
1/1/3311:3314		Tandem non-canonical cWW pairs
homologous
IL_8C3A_135
NA
IL_7OHY_0601/1/3318:3320,
1/1/3387:3388		Single bulged U
homologous
IL_5TBW_130
NA
IL_7OHY_0611/1/3324:3325,
1/1/3381:3383		No text annotation
IL_7OHY_0791/1/3332:3339,
1/1/3365:3371		No text annotation
IL_7OHY_0641/1/3340:3342,
1/1/3363:3364		Single bulged U
homologous
IL_5TBW_134
NA
IL_7OHY_0651/1/3342:3345,
1/1/3360:3363		Double sheared; A in syn
homologous
IL_5TBW_135
NA
IL_7OHY_0661/1/3349:3350,
1/1/3353:3356		Multiple bulged bases
homologous
IL_8C3A_142
NA
IL_7OHY_0801/2/64:66,
1/2/93:96		No text annotation
homologous
IL_8P9A_371
IL_07785.1
IL_7OHY_0681/2/68:69,
1/2/89:91		Single bulged U
geometric
IL_5TBW_146
NA

Problematic loops

#loop idProblemSequence
IL_7OHY_007No text annotation
IL_7OHY_069No text annotation
IL_7OHY_013No text annotation
IL_7OHY_023No text annotation
IL_7OHY_025No text annotation
IL_7OHY_028No text annotation
IL_7OHY_030No text annotation
IL_7OHY_035No text annotation
IL_7OHY_073Triple non-canonical cWW pairs
IL_7OHY_062No text annotation
IL_7OHY_063No text annotation
IL_7OHY_074No text annotation
IL_7OHY_067No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7OHY_0011/1/113:123,
1/1/149:158,
1/1/263:267		No text annotation
homologous
J3_8P9A_042
J3_19664.1
J3_7OHY_0081/1/113:124,
1/1/144:158,
1/1/263:267		No text annotation
J3_7OHY_0091/1/185:189,
1/1/205:214,
1/1/226:231		No text annotation
homologous
J3_8P9A_044
J3_75408.1
J3_7OHY_0101/1/340:356,
1/1/363:368,
1/2/21:24		No text annotation
homologous
J3_8C3A_047
NA
J3_7OHY_0021/1/369:376,
1/1/403:404,
1/2/19:20		No text annotation
homologous
J3_5TBW_002
NA
J3_7OHY_0031/1/435:442,
1/1/492:495,
1/1/618:624		No text annotation
J3_7OHY_0041/1/502:503,
1/1/588:597,
1/1/606:611		No text annotation
homologous
J3_5TBW_003
NA
J3_7OHY_0051/1/1230:1232,
1/1/1256:1262,
1/1/1277:1279		No text annotation
homologous
J3_5TBW_007
NA
J3_7OHY_0111/1/3171:3176,
1/1/3212:3220,
1/1/3265:3279		No text annotation
homologous
J3_8P9A_064
J3_03190.1
J3_7OHY_0061/1/3298:3300,
1/1/3314:3318,
1/1/3388:3390		No text annotation
homologous
J3_5TBW_015
NA
J3_7OHY_0071/2/44:45,
1/2/58:64,
1/2/96:100		No text annotation
homologous
J3_8C3A_060
NA
J4_7OHY_0011/1/112:113,
1/1/267:272,
1/1/293:299,
1/1/316:319		No text annotation
homologous
J4_8C3A_001
NA
J4_7OHY_0021/1/185:189,
1/1/205:208,
1/1/212:214,
1/1/226:231		No text annotation
homologous
J4_8P9A_013
J4_12410.1
J4_7OHY_0031/1/3010:3012,
1/1/3042:3043,
1/1/3098:3100,
1/1/3134:3136		No text annotation
homologous
J4_8P9A_020
J4_65356.1
J5_7OHY_0011/1/20:22,
1/2/35:42,
1/2/102:107,
1/2/115:116,
1/2/137:139		No text annotation
homologous
J5_8P9A_010
J5_01737.2
J5_7OHY_0021/1/658:663,
1/1/799:802,
1/1/941:944,
1/1/1375:1376,
1/1/1431:1437		No text annotation
J6_7OHY_0011/1/22:27,
1/1/58:68,
1/1/75:79,
1/1/106:110,
1/1/321:331,
1/2/32:35		No text annotation
J7_7OHY_0021/1/949:958,
1/1/964:968,
1/1/1114:1117,
1/1/1141:1146,
1/1/1157:1161,
1/1/1338:1339,
1/1/1365:1370		No text annotation

Problematic loops

#loop idProblemSequence
J7_7OHY_001No text annotation

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