RNA 3D Hub //

7OHY Hairpin, Internal, and multi-helix Junction Loop Motifs

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Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7OHY_0021/1/69:74No text annotation
homologous
HL_8C3A_002
NA
HL_7OHY_0041/1/132:136No text annotation
homologous
HL_5TBW_004
NA
HL_7OHY_0051/1/194:201T-loop with 2 stacked bulged bases
homologous
HL_8C3A_005
NA
HL_7OHY_0061/1/208:212No text annotation
homologous
HL_5TBW_006
NA
HL_7OHY_0071/1/216:224T-loop with unstacked turn
homologous
HL_8C3A_007
NA
HL_7OHY_0101/1/357:362GNRA
homologous
HL_8C3A_010
NA
HL_7OHY_0151/1/640:649No text annotation
HL_7OHY_0161/1/686:694No text annotation
homologous
HL_8C3A_015
NA
HL_7OHY_0241/1/1148:1155No text annotation
homologous
HL_8C3A_026
NA
HL_7OHY_0281/1/1403:1408GNRA
homologous
HL_8C3A_030
NA
HL_7OHY_0351/1/3110:3124No text annotation
homologous
HL_8C3A_068
NA
HL_7OHY_0371/1/3240:3247No text annotation
homologous
HL_5TBW_069
NA
HL_7OHY_0401/2/47:56tRNA anticodon loop
geometric
HL_6JXM_002
NA
HL_7OHY_0411/2/69:89No text annotation
homologous
HL_8P4V_073
NA

Problematic loops

#loop idProblemSequence
HL_7OHY_001No text annotation
HL_7OHY_003No text annotation
HL_7OHY_008No text annotation
HL_7OHY_009No text annotation
HL_7OHY_011No text annotation
HL_7OHY_012No text annotation
HL_7OHY_013No text annotation
HL_7OHY_014GNRA
HL_7OHY_017No text annotation
HL_7OHY_018GNRA
HL_7OHY_019No text annotation
HL_7OHY_020No text annotation
HL_7OHY_021Externally structured
HL_7OHY_022No text annotation
HL_7OHY_023Other HL
HL_7OHY_025No text annotation
HL_7OHY_026GNRA wlth tandem sheared
HL_7OHY_027No text annotation
HL_7OHY_029Externally structured
HL_7OHY_030No text annotation
HL_7OHY_031No text annotation
HL_7OHY_032No text annotation
HL_7OHY_033GNRA related
HL_7OHY_034No text annotation
HL_7OHY_036Mini UNCG
HL_7OHY_038No text annotation
HL_7OHY_039No text annotation
HL_7OHY_042No text annotation
HL_7OHY_043No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7OHY_0031/1/27:28,
1/1/56:58		No text annotation
homologous
IL_8C3A_004
NA
IL_7OHY_0041/1/82:89,
1/1/97:103		No text annotation
homologous
IL_8C3A_006
NA
IL_7OHY_0051/1/123:124,
1/1/144:149		No text annotation
geometric
IL_5TBW_007
NA
IL_7OHY_0111/1/337:339,
1/2/25:26		Single bulged A
homologous
IL_5TBW_013
NA
IL_7OHY_0121/1/376:379,
1/1/390:403		No text annotation
geometric
IL_5TBW_014
NA
IL_7OHY_0761/1/404:410,
1/2/13:19		No text annotation
homologous
IL_8P9A_244
IL_22311.1
IL_7OHY_0141/1/429:431,
1/1/628:630		Isolated non-canonical cWW pair
homologous
IL_5TBW_016
NA
IL_7OHY_0171/1/512:513,
1/1/577:579		Single bulged A
homologous
IL_8C3A_020
NA
IL_7OHY_0181/1/517:525,
1/1/567:573		No text annotation
homologous
IL_5TBW_019
NA
IL_7OHY_0191/1/531:538,
1/1/553:561		No text annotation
homologous
IL_5TBW_020
NA
IL_7OHY_0201/1/668:670,
1/1/792:794		Isolated non-canonical cWW pair
homologous
IL_8C3A_023
NA
IL_7OHY_0211/1/680:684,
1/1/696:700		No text annotation
homologous
IL_5TBW_022
NA
IL_7OHY_0241/1/803:805,
1/1/938:940		Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_7OHY_0291/1/983:985,
1/1/1099:1100		Single bulged G
homologous
IL_8C3A_040
NA
IL_7OHY_0321/1/1167:1171,
1/1/1328:1332		UAA/GAN
homologous
IL_8C3A_051
NA
IL_7OHY_0331/1/1173:1182,
1/1/1324:1326		Isolated non-canonical cWW pair
geometric
IL_4M4O_001
NA
IL_7OHY_0341/1/1186:1194,
1/1/1314:1320		No text annotation
IL_7OHY_0401/1/1376:1378,
1/1/1428:1431		No text annotation
homologous
IL_8C3A_061
NA
IL_7OHY_0411/1/1385:1387,
1/1/1420:1421		Single bulged A
homologous
IL_8C3A_062
NA
IL_7OHY_0421/1/1388:1395,
1/1/1415:1419		Kink-turn
geometric
IL_3V7E_002
NA
IL_7OHY_0431/1/1398:1400,
1/1/1411:1412		Single bulged A
geometric
IL_7RQB_033
NA
IL_7OHY_0451/1/3004:3007,
1/1/3139:3144		Double sheared
homologous
IL_8C3A_123
NA
IL_7OHY_0461/1/3012:3014,
1/1/3040:3042		Isolated non-canonical cWW pair
homologous
IL_5TBW_115
NA
IL_7OHY_0521/1/3168:3170,
1/1/3280:3282		Isolated non-canonical cWW pair
homologous
IL_5TBW_122
NA
IL_7OHY_0531/1/3177:3179,
1/1/3210:3211		Single bulged A
homologous
IL_5TBW_123
NA
IL_7OHY_0541/1/3179:3188,
1/1/3204:3210		No text annotation
geometric
IL_5TBW_124
NA
IL_7OHY_0551/1/3193:3194,
1/1/3197:3199		Single bulged U
homologous
IL_5TBW_125
NA
IL_7OHY_0561/1/3225:3229,
1/1/3258:3260		No text annotation
homologous
IL_8C3A_133
NA
IL_7OHY_0641/1/3340:3342,
1/1/3363:3364		Single bulged U
homologous
IL_5TBW_134
NA
IL_7OHY_0801/2/64:66,
1/2/93:96		Isolated non-canonical cWW with bulges
homologous
IL_8P9A_371
IL_68118.1

Problematic loops

#loop idProblemSequence
IL_7OHY_001Single bulged C
IL_7OHY_002Single bulged U
IL_7OHY_006Isolated non-canonical cWW pair
IL_7OHY_075No text annotation
IL_7OHY_007No text annotation
IL_7OHY_008No text annotation
IL_7OHY_069No text annotation
IL_7OHY_009Single bulged U
IL_7OHY_010Isolated non-canonical cWW pair
IL_7OHY_013No text annotation
IL_7OHY_015Triple non-canonical cWW pairs
IL_7OHY_016No text annotation
IL_7OHY_022No text annotation
IL_7OHY_077No text annotation
IL_7OHY_023No text annotation
IL_7OHY_025No text annotation
IL_7OHY_026Single stack bend
IL_7OHY_027No text annotation
IL_7OHY_078No text annotation
IL_7OHY_028No text annotation
IL_7OHY_030No text annotation
IL_7OHY_031Tandem non-canonical cWW pairs
IL_7OHY_070No text annotation
IL_7OHY_035No text annotation
IL_7OHY_036Single bulged U
IL_7OHY_037No text annotation
IL_7OHY_038No text annotation
IL_7OHY_039Major groove platform with extra cWW
IL_7OHY_044No text annotation
IL_7OHY_071Isolated cWH basepair
IL_7OHY_0478x7 Sarcin-Ricin; G-bulge
IL_7OHY_048Major groove minor groove platform with tHH
IL_7OHY_072No text annotation
IL_7OHY_049No text annotation
IL_7OHY_050UAA/GAN
IL_7OHY_051Isolated non-canonical cWW pair
IL_7OHY_057Isolated non-canonical cWW pair
IL_7OHY_058Tandem non-canonical cWW pairs
IL_7OHY_073Triple non-canonical cWW pairs
IL_7OHY_059Tandem non-canonical cWW pairs
IL_7OHY_060Single bulged U
IL_7OHY_061No text annotation
IL_7OHY_062No text annotation
IL_7OHY_063No text annotation
IL_7OHY_079No text annotation
IL_7OHY_074No text annotation
IL_7OHY_065Double sheared; A in syn
IL_7OHY_066Multiple bulged bases
IL_7OHY_067No text annotation
IL_7OHY_068Single bulged U

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7OHY_0081/1/113:124,
1/1/144:158,
1/1/263:267		No text annotation
J3_7OHY_0091/1/185:189,
1/1/205:214,
1/1/226:231		No text annotation
homologous
J3_8P9A_044
J3_97456.1
J3_7OHY_0101/1/340:356,
1/1/363:368,
1/2/21:24		No text annotation
homologous
J3_8C3A_047
NA
J3_7OHY_0021/1/369:376,
1/1/403:404,
1/2/19:20		No text annotation
homologous
J3_5TBW_002
NA
J3_7OHY_0031/1/435:442,
1/1/492:495,
1/1/618:624		No text annotation
J3_7OHY_0041/1/502:503,
1/1/588:597,
1/1/606:611		No text annotation
homologous
J3_5TBW_003
NA
J3_7OHY_0111/1/3171:3176,
1/1/3212:3220,
1/1/3265:3279		No text annotation
homologous
J3_8P9A_064
J3_03190.1
J3_7OHY_0071/2/44:45,
1/2/58:64,
1/2/96:100		No text annotation
homologous
J3_8C3A_060
NA
J4_7OHY_0011/1/112:113,
1/1/267:272,
1/1/293:299,
1/1/316:319		No text annotation
homologous
J4_8C3A_001
NA
J4_7OHY_0021/1/185:189,
1/1/205:208,
1/1/212:214,
1/1/226:231		No text annotation
homologous
J4_8P9A_013
J4_43318.1
J4_7OHY_0031/1/3010:3012,
1/1/3042:3043,
1/1/3098:3100,
1/1/3134:3136		No text annotation
homologous
J4_8P9A_020
J4_37757.1
J5_7OHY_0011/1/20:22,
1/2/35:42,
1/2/102:107,
1/2/115:116,
1/2/137:139		No text annotation
homologous
J5_8P9A_010
J5_27223.1
J5_7OHY_0021/1/658:663,
1/1/799:802,
1/1/941:944,
1/1/1375:1376,
1/1/1431:1437		No text annotation
J6_7OHY_0011/1/22:27,
1/1/58:68,
1/1/75:79,
1/1/106:110,
1/1/321:331,
1/2/32:35		No text annotation
J7_7OHY_0021/1/949:958,
1/1/964:968,
1/1/1114:1117,
1/1/1141:1146,
1/1/1157:1161,
1/1/1338:1339,
1/1/1365:1370		No text annotation

Problematic loops

#loop idProblemSequence
J3_7OHY_001No text annotation
J3_7OHY_005No text annotation
J3_7OHY_006No text annotation
J7_7OHY_001No text annotation

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