HL_7OHY_031
3D structure
- PDB id
- 7OHY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL34 expression shut down, population B
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGUCGCGACAUU
- Length
- 12 nucleotides
- Bulged bases
- 7OHY|1|1|G|2848, 7OHY|1|1|C|2849, 7OHY|1|1|G|2850
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7OHY_031 not in the Motif Atlas
- Geometric match to HL_1KH6_003
- Geometric discrepancy: 0.2869
- The information below is about HL_1KH6_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_27483.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7OHY|1|1|A|2833
7OHY|1|1|G|2834
7OHY|1|1|U|2835
7OHY|1|1|C|2836
7OHY|1|1|G|2848
7OHY|1|1|C|2849
7OHY|1|1|G|2850
7OHY|1|1|A|2851
7OHY|1|1|C|2852
7OHY|1|1|A|2853
7OHY|1|1|U|2854
7OHY|1|1|U|2855
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain b
- Nucleolar GTP-binding protein 1
- Chain r
- Ribosome biogenesis protein NSA2
Coloring options: