3D structure

PDB id
7OI0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E.coli delta rbfA pre-30S ribosomal subunit class D
Experimental method
ELECTRON MICROSCOPY
Resolution
2.76 Å

Loop

Sequence
CGCAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7OI0_010 not in the Motif Atlas
Homologous match to HL_5J7L_010
Geometric discrepancy: 0.0991
The information below is about HL_5J7L_010
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

7OI0|1|A|C|379
7OI0|1|A|G|380
7OI0|1|A|C|381
7OI0|1|A|A|382
7OI0|1|A|A|383
7OI0|1|A|G|384

Current chains

Chain A
16S rRNA

Nearby chains

Chain P
30S ribosomal protein S16

Coloring options:


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