HL_7OI0_018

3D structure

PDB id

7OI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli delta rbfA pre-30S ribosomal subunit class D

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

7OI0|1|A|U|842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OI0_018 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2991

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7OI0|1|A|C|840
7OI0|1|A|C|841
7OI0|1|A|U|842
7OI0|1|A|U|843
7OI0|1|A|G|844
7OI0|1|A|A|845
7OI0|1|A|G|846

Current chains

Chain A

16S rRNA

Nearby chains

Chain R

30S ribosomal protein S18