HL_7OI6_006

3D structure

PDB id

7OI6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of late human 39S mitoribosome assembly intermediates, state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GAGAGC

Length

6 nucleotides

Bulged bases

7OI6|1|A|G|216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7OI6_006 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.3678

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

7OI6|1|A|G|214
7OI6|1|A|A|215
7OI6|1|A|G|216
7OI6|1|A|A|217
7OI6|1|A|G|218
7OI6|1|A|C|219

Current chains

Chain A

16S rRNA

Nearby chains

Chain F

39S ribosomal protein L4, mitochondrial

Chain M

39S ribosomal protein L15, mitochondrial

Chain g

39S ribosomal protein L49, mitochondrial

Chain i

39S ribosomal protein L51, mitochondrial