7OI6 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7OI6_003 | 1/A/116:121 | GNRA | homologous HL_7RQB_015 NA | |
| HL_7OI6_004 | 1/A/161:169 | No text annotation | homologous HL_7RQB_017 NA | |
| HL_7OI6_006 | 1/A/214:219 | No text annotation | geometric HL_7RQB_011 NA | |
| HL_7OI6_012 | 1/A/459:466 | No text annotation | homologous HL_4WF9_028 HL_47171.1 | |
| HL_7OI6_015 | 1/A/609:616 | No text annotation | geometric HL_5E6M_002 HL_10874.1 | |
| HL_7OI6_016 | 1/A/649:654 | No text annotation | geometric HL_5U3G_001 HL_75660.8 | |
| HL_7OI6_030 | 1/A/1484:1489 | No text annotation | geometric HL_5FMZ_001 HL_19413.2 | |
| HL_7OI6_031 | 1/A/1506:1523 | No text annotation | geometric HL_7A0S_074 NA | |
| HL_7OI6_032 | 1/A/1546:1554 | No text annotation | geometric HL_5TBW_070 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7OI6_001 | No text annotation | ||
| HL_7OI6_002 | No text annotation | ||
| HL_7OI6_005 | No text annotation | ||
| HL_7OI6_007 | Mini UNCG | ||
| HL_7OI6_008 | No text annotation | ||
| HL_7OI6_009 | No text annotation | ||
| HL_7OI6_010 | No text annotation | ||
| HL_7OI6_011 | GNRA | ||
| HL_7OI6_013 | No text annotation | ||
| HL_7OI6_014 | GNRA wlth tandem sheared | ||
| HL_7OI6_017 | No text annotation | ||
| HL_7OI6_018 | Mini UNCG | ||
| HL_7OI6_019 | No text annotation | ||
| HL_7OI6_020 | No text annotation | ||
| HL_7OI6_021 | No text annotation | ||
| HL_7OI6_022 | No text annotation | ||
| HL_7OI6_023 | UNCG variation | ||
| HL_7OI6_024 | No text annotation | ||
| HL_7OI6_025 | GNRA | ||
| HL_7OI6_026 | No text annotation | ||
| HL_7OI6_027 | No text annotation | ||
| HL_7OI6_028 | No text annotation | ||
| HL_7OI6_029 | No text annotation | ||
| HL_7OI6_033 | tRNA D-loop | ||
| HL_7OI6_034 | tRNA anticodon loop |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7OI6_002 | 1/A/12:13, 1/A/98:100 | Single bulged A | homologous IL_7A0S_002 IL_14190.2 | |
| IL_7OI6_003 | 1/A/69:75, 1/A/83:88 | No text annotation | geometric IL_8C3A_065 NA | |
| IL_7OI6_004 | 1/A/175:177, 1/A/186:188 | Isolated non-canonical cWW pair | geometric IL_4KYY_002 IL_71625.3 | |
| IL_7OI6_005 | 1/A/207:209, 1/A/225:227 | Isolated non-canonical cWW pair | geometric IL_4E48_003 IL_01003.4 | |
| IL_7OI6_006 | 1/A/210:213, 1/A/220:224 | No text annotation | ||
| IL_7OI6_007 | 1/A/234:236, 1/A/346:348 | Isolated non-canonical cWW pair | geometric IL_7A0S_026 IL_01003.4 | |
| IL_7OI6_041 | 1/A/234:240, 1/A/339:348 | No text annotation | ||
| IL_7OI6_008 | 1/A/236:240, 1/A/339:346 | tHW-tHW cross-strand stack | homologous IL_7RQB_018 NA | |
| IL_7OI6_012 | 1/A/315:317, 1/A/327:331 | Multiple bulged bases | geometric IL_4WF9_027 IL_89509.1 | |
| IL_7OI6_015 | 1/A/475:477, 1/A/584:585 | Single bulged C | homologous IL_5J7L_276 NA | |
| IL_7OI6_016 | 1/A/479:483, 1/A/578:582 | UAA/GAN | geometric IL_5TBW_048 NA | |
| IL_7OI6_020 | 1/A/636:643, 1/A/1004:1010 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 NA | |
| IL_7OI6_042 | 1/A/660:663, 1/A/771:777 | No text annotation | ||
| IL_7OI6_043 | 1/A/707:711, 1/A/741:749 | No text annotation | ||
| IL_7OI6_022 | 1/A/786:791, 1/A/996:998 | No text annotation | ||
| IL_7OI6_024 | 1/A/800:803, 1/A/986:987 | Major groove platform; stack outside cWW | homologous IL_5J7L_306 NA | |
| IL_7OI6_025 | 1/A/1042:1045, 1/A/1434:1436 | Major groove platform with extra pair | geometric IL_5TBW_091 NA | |
| IL_7OI6_039 | 1/A/1478:1482, 1/A/1491:1493 | C-loop | geometric IL_5B2P_003 IL_63596.12 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7OI6_001 | No text annotation | ||
| IL_7OI6_009 | Isolated non-canonical cWW pair | ||
| IL_7OI6_010 | Isolated non-canonical cWW pair | ||
| IL_7OI6_011 | Single bulged A | ||
| IL_7OI6_013 | No text annotation | ||
| IL_7OI6_014 | No text annotation | ||
| IL_7OI6_017 | Isolated near basepair | ||
| IL_7OI6_018 | No text annotation | ||
| IL_7OI6_019 | No text annotation | ||
| IL_7OI6_021 | No text annotation | ||
| IL_7OI6_044 | No text annotation | ||
| IL_7OI6_023 | Isolated tWW turn | ||
| IL_7OI6_026 | Single bulged U | ||
| IL_7OI6_027 | Minor groove platform | ||
| IL_7OI6_028 | Minor groove platform | ||
| IL_7OI6_029 | Double sheared with non-canonical cWW | ||
| IL_7OI6_030 | Major groove platform | ||
| IL_7OI6_031 | Major groove platform with extra pair | ||
| IL_7OI6_045 | No text annotation | ||
| IL_7OI6_032 | Major groove minor groove platform with extra cWW | ||
| IL_7OI6_033 | No text annotation | ||
| IL_7OI6_034 | Minor groove platform | ||
| IL_7OI6_035 | No text annotation | ||
| IL_7OI6_036 | No text annotation | ||
| IL_7OI6_037 | Isolated non-canonical cWW pair | ||
| IL_7OI6_038 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_7OI6_040 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7OI6_005 | 1/A/8:11, 1/A/101:115, 1/A/122:127 | No text annotation | ||
| J3_7OI6_001 | 1/A/245:251, 1/A/313:315, 1/A/331:334 | No text annotation | homologous J3_5J7L_038 NA | |
| J3_7OI6_002 | 1/A/666:673, 1/A/753:757, 1/A/766:768 | No text annotation | ||
| J3_7OI6_003 | 1/A/673:675, 1/A/698:705, 1/A/751:753 | No text annotation | ||
| J4_7OI6_001 | 1/A/644:647, 1/A/656:657, 1/A/780:783, 1/A/1001:1003 | No text annotation | ||
| J4_7OI6_002 | 1/A/666:675, 1/A/698:705, 1/A/751:757, 1/A/766:768 | No text annotation | ||
| J5_7OI6_001 | 1/A/157:159, 1/A/171:175, 1/A/188:190, 1/A/635:636, 1/A/1010:1011 | No text annotation | homologous J5_9DFE_003 J5_43153.6 | |
| J5_7OI6_002 | 1/A/195:205, 1/A/229:233, 1/A/349:352, 1/A/601:605, 1/A/620:630 | No text annotation | ||
| J6_7OI6_002 | 1/A/357:362, 1/A/373:374, 1/A/426:428, 1/A/453:457, 1/A/468:473, 1/A/587:596 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7OI6_004 | No text annotation | ||
| J6_7OI6_001 | No text annotation |
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